PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00060.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 330aa MW: 34609.6 Da PI: 6.5656 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 81.3 | 1.5e-25 | 4 | 113 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGa......snvlkllkalpeeeredamsslvyeAearar 70 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G+ + +l+ll+a+ ++ ++++sl+yeA+ r+ Zmw_sc00060.1.g00070.1.sm.mk 4 SCNGCRVLRKGCSDGCTIRPCLqwikaPEAQANATVFLAKFYGRxxxxgrAGLLNLLAAAGPDGPAAVFRSLLYEACGRIV 84 6*****************************************862222226899*************************** PP DUF260 71 dPvyGavgvilklqqqleqlkaelallke 99 +PvyG+vg+++++q++ +q+++e++l +e Zmw_sc00060.1.g00070.1.sm.mk 85 NPVYGSVGLLWSGQWHACQAAVEAVLKGE 113 **********************9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.094 | 3 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-20 | 4 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDGCT IRPCLQWIKA PEAQANATVF LAKFYGRXXX XGRAGLLNLL 60 AAAGPDGPAA VFRSLLYEAC GRIVNPVYGS VGLLWSGQWH ACQAAVEAVL KGEPVVRVAA 120 NSASSAEHPE TEATPPLSAR AACDIRHVGA KDRDASAAAA AAAVADLLRV SRAGRTKFKR 180 ASSSSITSKT KPAVVGASKP DNSRASPRPS TPTQEVRDPV VGLGSGDELD DARALSHREA 240 SAGSHQHLDD HCDVAAAQDG SSEDTEAEAG SHVSQAEEHH SHVHASSQDE DDEEVDLELA 300 LGLEPVAVRH EARSSTCNLR RLSAVSILMG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024310953.1 | 3e-95 | LOB domain-containing protein 42-like | ||||
TrEMBL | I1IL92 | 6e-94 | I1IL92_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G16740.1 | 1e-94 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |