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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00059.1.g00720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 23978.1 Da PI: 4.2258 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 12 | 63 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++g+ Zmw_sc00059.1.g00720.1.sm.mk 12 SSYLGVRRRP-WGRYAAEIRDPVT---KERHWLGTFDTAEEAAIAYDRAARNIRGA 63 5799******.**********754...5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.17E-28 | 12 | 71 | No hit | No description |
SuperFamily | SSF54171 | 1.7E-21 | 12 | 70 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.2E-11 | 13 | 62 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.074 | 13 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-29 | 13 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-32 | 13 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-8 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-8 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MQPPHAAAAT ASSYLGVRRR PWGRYAAEIR DPVTKERHWL GTFDTAEEAA IAYDRAARNI 60 RGASARTNFA YPDLPPGSSV TPYLSPDISA DQLQQYYANP VPVAQQPTPA ADQLAGHGSA 120 GCEAYSSSYH VPEAMSSYGA DDSMAYAGNA QMDMMYDGGA GAGAGMAWCD ASELEFGGYS 180 DDNANASHGM YFEEGYVHSP LFSPMPAADE VDGFQLGGSS SSYYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 2 | 69 | 3 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821358.1 | 1e-105 | ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A1E5VG73 | 1e-112 | A0A1E5VG73_9POAL; Ethylene-responsive transcription factor LEP | ||||
STRING | GRMZM2G047999_P01 | 1e-102 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |