PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00055.1.g00530.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 636aa MW: 70152.9 Da PI: 6.7724

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00055.1.g00530.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	50.6	5.7e-16	11	81	2	72
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardP 72 C aC+++rrkC++dCv+ap+f ++ ++fa++ + FGas v++ l+ ++ er ++++ lv A a + P Zmw_sc00055.1.g00530.1.sm.mk 11 CVACRHMRRKCEPDCVFAPHFGPDDGERFAALDRAFGASFVSQQLAGREPRERAATIEMLVRIAIASVPRP 81 9******************************************************9999987777766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.347	9	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.7E-15	11	81	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence Send to blast
MASSEEAEKV CVACRHMRRK CEPDCVFAPH FGPDDGERFA ALDRAFGASF VSQQLAGREP 60 RERAATIEML VRIAIASVPR PAGVKAQQEA AAAQFSREQA LIRQYHTGTG FGVPAYQSAE 120 YQAMIASHQE MLMRNAGALY QPLELEELLQ GAAAKQKSTL QPVAEVQQQR TAAEEVARHH 180 DMVMRQAAAA QNYQALGLEQ QREGAAGKQK SILQPVAELQ QQRTAADVVA RYHDMVMRQA 240 AAAVQNYQAL GLEQQRDGAA AKQKSMLQPV AELQQQRTAA DEVARYHDMM MRQAAAAAVQ 300 NYQALGLEQQ RESAAAKQKS MLQPVAELQQ ERTAADEVAR HHAMIMRQAA AAQNYLGIEQ 360 QREGAAAKQK SMLQPVAELQ QQRTAAEEVA RHHDKMMQQA AAAQNYQALG LEQQHQNRQL 420 AEDVMHQTEL TAEAAKRATA EEAAGVREVD MVLQSLRQAA VEEQYMNNYL RAVMLETVAD 480 GQQQQHPLHH DQAGQNAAML QQKLAQGIVN TQKIDQQIAI AQQHWEKKLT MMQQAAANAP 540 AMRGEQPQPQ RQTRNAQFQK ESSLPPLPTQ PRHAGGASGA RTMPFLPGRS ADSEAFLVQP 600 SLPSLPPSLA DTPRQQQNDG GNEDLSVDPT LRLWNH

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence Send to blast

MASSEEAEKV CVACRHMRRK CEPDCVFAPH FGPDDGERFA ALDRAFGASF VSQQLAGREP  60
RERAATIEML VRIAIASVPR PAGVKAQQEA AAAQFSREQA LIRQYHTGTG FGVPAYQSAE  120
YQAMIASHQE MLMRNAGALY QPLELEELLQ GAAAKQKSTL QPVAEVQQQR TAAEEVARHH  180
DMVMRQAAAA QNYQALGLEQ QREGAAGKQK SILQPVAELQ QQRTAADVVA RYHDMVMRQA  240
AAAVQNYQAL GLEQQRDGAA AKQKSMLQPV AELQQQRTAA DEVARYHDMM MRQAAAAAVQ  300
NYQALGLEQQ RESAAAKQKS MLQPVAELQQ ERTAADEVAR HHAMIMRQAA AAQNYLGIEQ  360
QREGAAAKQK SMLQPVAELQ QQRTAAEEVA RHHDKMMQQA AAAQNYQALG LEQQHQNRQL  420
AEDVMHQTEL TAEAAKRATA EEAAGVREVD MVLQSLRQAA VEEQYMNNYL RAVMLETVAD  480
GQQQQHPLHH DQAGQNAAML QQKLAQGIVN TQKIDQQIAI AQQHWEKKLT MMQQAAANAP  540
AMRGEQPQPQ RQTRNAQFQK ESSLPPLPTQ PRHAGGASGA RTMPFLPGRS ADSEAFLVQP  600
SLPSLPPSLA DTPRQQQNDG GNEDLSVDPT LRLWNH

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36265	3	4