PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc00055.1.g00500.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 760aa MW: 83778.3 Da PI: 4.2899

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00055.1.g00500.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	55.1	2.3e-17	72	132	2	62
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslv 62 C aCk++rrkC++dCv+apyf e++++fa++ + Gasnv k+l +++++er +a++ v Zmw_sc00055.1.g00500.1.am.mk 72 CVACKHMRRKCEPDCVFAPYFGPEDEERFAVMDRGIGASNVAKMLGRIDPQERAHAIDMFV 132 *****************************************************99987554 PP
2	DUF260	58.5	1.9e-18	223	292	2	71
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearard 71 CaaC+ +rrkC++dCv+ p f e+ ++f +v ++FGa+ v+ +l++l ++er +a++ lv +A +r+ Zmw_sc00055.1.g00500.1.am.mk 223 CAACRQMRRKCVPDCVFVPFFGPEDGERFYAVDRIFGAHYVSDMLEDLAPHERWNAVEMLVHQATLGMRN 292 ****************************************************************987776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.3	70	171	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-16	72	135	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	15.453	221	322	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-17	223	294	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence Send to blast
MPRRRRRPLP SSLPAPSPSS STTCGKQPLL PACSFRFERM HELTNRSSMS EATRPSEEVS 60 AAPELEPQSQ DCVACKHMRR KCEPDCVFAP YFGPEDEERF AVMDRGIGAS NVAKMLGRID 120 PQERAHAIDM FVAAAIQGMP AERPPWTVSL EEQQLAAFLV ERPQNRPPRT LIMLEQARHE 180 NQQMAEAANS NVLSGRQNQH SSTVCAMSSS SVAPETEPQS QDCAACRQMR RKCVPDCVFV 240 PFFGPEDGER FYAVDRIFGA HYVSDMLEDL APHERWNAVE MLVHQATLGM RNQQMAEVQQ 300 PQRADGRVYG NQQTVPQVAG SQNSAAVDQD QLRMKMMAQV RRNAAAARKA FFPQLAQLQQ 360 MRAAAEVAEV AMNPDMMMWQ ATAAPTQQMY QAEAQQLPAS TLGGATQRDM MMQQATAAAA 420 VQNYPYSVQQ YPEMGLEQQH QQNQQMAQAA NLATAAEAAM DQEMLEYLMM PAPSPAAAAA 480 TEQSNYQLGQ QQLPEPEKEH ALELPAADEF GWDEDLMTRQ FTEAVATAGV TTDEYLMMTT 540 TMVELQDVAG GQQNGHDHTE LYANMGQGHQ LGQQLSDPET EHALEVPAAD EFGWDEDLMT 600 RQMVEAAATA GVTADEYLMM TATMVELQDV AGGQQNGHDH AEQYANMGHG HQLGQQLPDP 660 ESTEQALELP AADEFGWDED LMTRQMAEAA ATAGVTADEY LMMTTTTLEL MDVPGGQQDG 720 HDHAERYANM GRGNTDLQRN GGGAEVQSPD VAAYFTNDDM

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence Send to blast

MPRRRRRPLP SSLPAPSPSS STTCGKQPLL PACSFRFERM HELTNRSSMS EATRPSEEVS  60
AAPELEPQSQ DCVACKHMRR KCEPDCVFAP YFGPEDEERF AVMDRGIGAS NVAKMLGRID  120
PQERAHAIDM FVAAAIQGMP AERPPWTVSL EEQQLAAFLV ERPQNRPPRT LIMLEQARHE  180
NQQMAEAANS NVLSGRQNQH SSTVCAMSSS SVAPETEPQS QDCAACRQMR RKCVPDCVFV  240
PFFGPEDGER FYAVDRIFGA HYVSDMLEDL APHERWNAVE MLVHQATLGM RNQQMAEVQQ  300
PQRADGRVYG NQQTVPQVAG SQNSAAVDQD QLRMKMMAQV RRNAAAARKA FFPQLAQLQQ  360
MRAAAEVAEV AMNPDMMMWQ ATAAPTQQMY QAEAQQLPAS TLGGATQRDM MMQQATAAAA  420
VQNYPYSVQQ YPEMGLEQQH QQNQQMAQAA NLATAAEAAM DQEMLEYLMM PAPSPAAAAA  480
TEQSNYQLGQ QQLPEPEKEH ALELPAADEF GWDEDLMTRQ FTEAVATAGV TTDEYLMMTT  540
TMVELQDVAG GQQNGHDHTE LYANMGQGHQ LGQQLSDPET EHALEVPAAD EFGWDEDLMT  600
RQMVEAAATA GVTADEYLMM TATMVELQDV AGGQQNGHDH AEQYANMGHG HQLGQQLPDP  660
ESTEQALELP AADEFGWDED LMTRQMAEAA ATAGVTADEY LMMTTTTLEL MDVPGGQQDG  720
HDHAERYANM GRGNTDLQRN GGGAEVQSPD VAAYFTNDDM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-17	61	286	1	75	LOB family transfactor Ramosa2.1
5ly0_B	6e-17	61	286	1	75	LOB family transfactor Ramosa2.1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1	7	PRRRRRP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36282	3	4