PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00055.1.g00420.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 787aa    MW: 84692.1 Da    PI: 7.3339
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00055.1.g00420.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA86.83.1e-27264318358
                     CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                   ++YVNaKQ+++Il+RR +Rak+++e+++ + +rkpylheSRh hAlrR+RgsgGrF
  Zmw_sc00055.1.g00420.1.am.mk 264 AIYVNAKQFKGILRRRLARAKAARERRV-SMKRKPYLHESRHLHALRRARGSGGRF 318
                                   69**************************.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-30260321IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.657261321IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.6E-26264318IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-19264286IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-19295318IPR001289Nuclear transcription factor Y subunit A
Gene3DG3DSA:3.30.70.3307.2E-23552656IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549288.19E-23554648IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010215.579568642IPR000504RNA recognition motif domain
SMARTSM003605.3E-21569638IPR000504RNA recognition motif domain
PfamPF000762.1E-14570636IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.6E-20657747IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549285.91E-22658751IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010216.961663741IPR000504RNA recognition motif domain
SMARTSM003601.2E-20664737IPR000504RNA recognition motif domain
PfamPF000761.5E-14665735IPR000504RNA recognition motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MMRSVSALAN HHSPIVDGFL SSDLGPRRPS IFLLLFRSPF PSSVSITIQN LEEAFLPSHG  60
ISMFFLLFPT LFVFLMSSKA AMNLNYQEHG MGFLQGAGAA HKFTPISAAG NTSSVWNGIV  120
VDGTYAIDEA SAVAIYITGR LSVTAALPRA RPPATGHSAA GARPRRRRRR AAALNAGRRA  180
HEATVHVWGG PGAGASPREL EWRSGLGVSY LGKQLAFHEP SAPTSFAYPA WQQDYSGCFD  240
LALGQSMGRR KVLLQPAITV EEPAIYVNAK QFKGILRRRL ARAKAARERR VSMKRKPYLH  300
ESRHLHALRR ARGSGGRFLN TRNVDAVPGG GGQAPPSADA FTGFGVGDAP ESTARSAMRD  360
SVAVSGVVSA AEGGRCGALS LQWEMQFLVL VNSELGALFS SHVPVESDSH SNTYEPLSPG  420
FSALQAPDET EVYQRREAAG PFHSPSSAPS LRRLASPAMS TAAAVAAAFR SLLQPAAKGV  480
LIPIPRVGFQ SLQLQRHQLV GLHSSSRPFL AAVPEAFSSD GEEYSEEDEE YFEEVEGEEE  540
EEDELEEVGA PPAYSSSQSR PVRGQEPGRL FVGNLPYTMT SAELSEAGRV DDAQILYDKV  600
TTRSRGFAFV TMATAEEAAK AVQMFDGALL GGRTVRVNYP EVPRGGERRT VTMSGRRRDD  660
GTYKIYAGNL VWGVRADALR AVFEGQPGLL DARVIFERET GRSRGFGFVS FTTAKDAQAA  720
LEALDGVGLE GRPLRLTLAE QNPPAGSPPR TVQAQQEETA SGTSDAEAEV TRASDLDENT  780
LQTTAVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mmj_v3e-275647398026030S ribosomal protein 2, chloroplastic
5mmm_v3e-275647398026030S ribosomal protein 2, chloroplastic
5x8p_v2e-2756473918198protein cS22
5x8r_v2e-2756473918198protein cS22
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162169RPRRRRRR
2164169RRRRRR