PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00049.1.g00340.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 482aa MW: 53165.9 Da PI: 4.9208

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00049.1.g00340.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.9	3.6e-34	27	118	2	101
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSE CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiw 79 Fl k+ye+++d++++e++sws ++ sfvv++++efa ++Lp+yFkhsn++SF+RQLn+YgF+k++ e+ w Zmw_sc00049.1.g00340.1.sm.mkhc 27 FLLKTYEMVDDPSTDEVVSWSdASDASFVVWNSTEFAARLLPTYFKHSNLSSFIRQLNTYGFRKIDPER---------W 96 9******************66679*************************************999......... PP EEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 80 eFkhksFkkgkkellekikrkk 101 eF+++ F kg+k+ll++i+r+k Zmw_sc00049.1.g00340.1.sm.mkhc 97 EFANEFFVKGQKHLLKNIHRRK 118 ********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.8E-35	23	117	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	9.98E-33	23	117	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.9E-58	23	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.7E-30	27	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-18	27	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-18	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	67	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-18	79	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MEVAASGARG STAGGGGGGG GGGPAPFLLK TYEMVDDPST DEVVSWSDAS DASFVVWNST 60 EFAARLLPTY FKHSNLSSFI RQLNTYGFRK IDPERWEFAN EFFVKGQKHL LKNIHRRKPI 120 HSHSHQPGAL PDNARASFED EIDRLSREKA ALQAELWKFS QQQSGATIQI EDLERRVLDM 180 EQRQVKMLNF LQQASKNPQF VNKLVKMAET SPIFSDAYHK KRRLPGLDYG TESTEITSFY 240 DDHSSTSRQE MGNLLNQHFS DKLKLGLCSA VAESNLITLS TQSSHEDNGS ANGKLPDCDR 300 VSIECLPLVP QMMELSDTGT SICPSKSSCF TTAVIDEGLL PCQLNLTLAS CSMDAERNQT 360 PNANGNSINQ DQGTENPLVA ATTTPMEMDD GLSRHHDDSH QRTPNDADSA AAMTTPRGNA 420 QVSTEAPPAP PAVVNDKFWE QFLTERPGCS ETEEASSTQR DPSRKQIEDT TNDRTDMQQL 480 KL

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MEVAASGARG STAGGGGGGG GGGPAPFLLK TYEMVDDPST DEVVSWSDAS DASFVVWNST  60
EFAARLLPTY FKHSNLSSFI RQLNTYGFRK IDPERWEFAN EFFVKGQKHL LKNIHRRKPI  120
HSHSHQPGAL PDNARASFED EIDRLSREKA ALQAELWKFS QQQSGATIQI EDLERRVLDM  180
EQRQVKMLNF LQQASKNPQF VNKLVKMAET SPIFSDAYHK KRRLPGLDYG TESTEITSFY  240
DDHSSTSRQE MGNLLNQHFS DKLKLGLCSA VAESNLITLS TQSSHEDNGS ANGKLPDCDR  300
VSIECLPLVP QMMELSDTGT SICPSKSSCF TTAVIDEGLL PCQLNLTLAS CSMDAERNQT  360
PNANGNSINQ DQGTENPLVA ATTTPMEMDD GLSRHHDDSH QRTPNDADSA AAMTTPRGNA  420
QVSTEAPPAP PAVVNDKFWE QFLTERPGCS ETEEASSTQR DPSRKQIEDT TNDRTDMQQL  480
KL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-22	7	117	1	129	Heat shock factor protein 1
5d5v_B	1e-22	7	117	1	129	Heat shock factor protein 1
5d5v_D	1e-22	7	117	1	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952518.1	0.0	heat stress transcription factor A-5
Swissprot	Q6K6S5	0.0	HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBL	A0A0D9VG52	0.0	A0A0D9VG52_9ORYZ; Uncharacterized protein
STRING	LPERR02G13860.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9000	32	41

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]