PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00045.1.g00470.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 342aa    MW: 36647.7 Da    PI: 6.3657
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00045.1.g00470.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.72.4e-31191241151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Zmw_sc00045.1.g00470.1.am.mk 191 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 241
                                   79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.277183243IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-41183242IPR002100Transcription factor, MADS-box
CDDcd002651.78E-40184242No hitNo description
SuperFamilySSF554552.22E-29184247IPR002100Transcription factor, MADS-box
PROSITE patternPS003500185239IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-32185205IPR002100Transcription factor, MADS-box
PfamPF003196.3E-26192239IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-32205220IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-32220241IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MWISLSLSLS LSLSLSLSLC GSPERASGAT GGVKQSTGAE KAIGGAHARR ERRPITIPPS  60
LPETGYGGPR LGFPPSSCFA GNGNLISGPL APTGCFAERA RSLTSAQLLP PVHEMSPATT  120
VLLVEACLQL PSLSSSLLAL LLSCLLGESD LAAEAEGSWG GKGKQQQQQE EAPPPPPPPA  180
TAMGRGRVEL KRIENKINRQ VTFAKRRNGL LKKAYELSVL CDAEVALIIF STRGKLYEFC  240
STQRSARPAI GEDEKQVAFL EYWLMDPELG FGGVPGRDQG DTFGFRLEES NQVLWQQAWE  300
HGERQPEVQP PQPQLHGGNG FFHPLDAAGE TTLQIGDMPK SI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-19183242160MEF2C
5f28_B5e-19183242160MEF2C
5f28_C5e-19183242160MEF2C
5f28_D5e-19183242160MEF2C
6byy_A4e-19183242160MEF2 CHIMERA
6byy_B4e-19183242160MEF2 CHIMERA
6byy_C4e-19183242160MEF2 CHIMERA
6byy_D4e-19183242160MEF2 CHIMERA
6bz1_A4e-19183242160MEF2 CHIMERA
6bz1_B4e-19183242160MEF2 CHIMERA
6bz1_C4e-19183242160MEF2 CHIMERA
6bz1_D4e-19183242160MEF2 CHIMERA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2814435