PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00044.1.g00740.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 355aa    MW: 37717.2 Da    PI: 5.9682
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00044.1.g00740.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.61.6e-133773339
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                                  i n ++r  tf+kR++g+ KKA EL +LC+++va++ 
  Zmw_sc00044.1.g00740.1.am.mk 37 IPNRRQRVNTFAKRKEGLTKKAGELATLCGVRVALVC 73
                                  679999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.6522772IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-1827108IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-122787IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-62949IPR002100Transcription factor, MADS-box
CDDcd002669.03E-2029106No hitNo description
PfamPF003193.1E-133773IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-64964IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MRSCLVRGCQ GDEQRASGEA AVEEIKMPRR KISMGLIPNR RQRVNTFAKR KEGLTKKAGE  60
LATLCGVRVA LVCGFADGAG AADVWESEPG VLNAYRDLPP EERAKHTHRA YAEAELRKAE  120
VKLVRVRQEG PAALAPGDAA VNLVGIDGYL LGAQGNNNAN EQQVMWDGGF DPCSAAVNWH  180
PAGYAIQPCT ADIDGAYKLQ HMAADMYGNN NNNSDSIGRL PWDAFHLPTN AVAGYGVEFT  240
GAGNSYVGGM PSYLTPPVLS NADLPLRYPS LEMRVNYLDA PAAQQQGVGG LSLAGSNFNF  300
IGTLDNFINA PQAQPLALSY HGGLVNANDY ASQWPSAGQL WGAAGSDPGT SRSVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815545.18e-52developmental protein SEPALLATA 3-like
TrEMBLA0A3L6R0J35e-53A0A3L6R0J3_PANMI; Uncharacterized protein
STRINGSi003942m3e-49(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960