PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00043.1.g00340.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 252aa MW: 26946.1 Da PI: 4.7764

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00043.1.g00340.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.7	1e-16	91	140	3	55
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr ++ +g+++AeIrd + k +r++lg+f+t+e Aa a+++a+ + +g Zmw_sc00043.1.g00340.1.sm.mk 91 FIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDTPEAAALAYDQAAFSARG 140 57****.******32..2.24*********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	4.3E-30	90	154	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.641	90	148	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-8	91	102	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-21	91	150	IPR016177	DNA-binding domain
CDD	cd00018	3.89E-14	91	125	No hit	No description
Gene3D	G3DSA:3.30.730.10	5.9E-28	91	149	IPR001471	AP2/ERF domain
Pfam	PF00847	2.3E-12	91	140	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-8	114	130	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MEQEKHSAPA AAQAASDAPL PFDTTDIDDE TVLQLEAILL GTDTDSTVPC SDMSTSSELE 60 DGRGSSAATN DHLQRPHPGY SQVPKQPPAA FIGVRKRPWG KFAAEIRDST RKGARVWLGT 120 FDTPEAAALA YDQAAFSARG AAAVLNFPLE CVRESLAAMA LTAGSSPILA LKRRHSKRTR 180 RRKVPPVSDG SKDPTPPACR RSDESAVLGS TVEVPQQQAT APCPFDCSVN VVELEELGAD 240 YLDELLWMSS GI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-25	91	151	15	75	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11950980}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269\|PubMed:11950980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004979115.1	5e-54	ethylene-responsive transcription factor ERF094
Swissprot	Q8VYM0	2e-38	ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBL	A0A2T7CMG4	4e-55	A0A2T7CMG4_9POAL; Uncharacterized protein
STRING	Pavir.Hb01336.1.p	6e-53	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP28680	3	5

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang H, et al. Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea. Front Plant Sci, 2015. 6: p. 686 [PMID:26388886]