PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00039.1.g00370.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 304aa MW: 32204.8 Da PI: 5.9125

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00039.1.g00370.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	77	2.2e-24	108	169	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqKe+++s++p++Y+rCt++ +C ++++v+r++e p++ ++tY g H+++ Zmw_sc00039.1.g00370.1.sm.mkhc 108 LDDGHAWRKYGQKEIQNSKHPKAYFRCTHKfdqQCLAQRQVQRCDEAPETYTVTYIGAHTCR 169 59*************************9999************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-25	94	171	IPR003657	WRKY domain
PROSITE profile	PS50811	19.749	103	171	IPR003657	WRKY domain
SuperFamily	SSF118290	7.72E-24	103	171	IPR003657	WRKY domain
SMART	SM00774	2.2E-34	108	170	IPR003657	WRKY domain
Pfam	PF03106	1.9E-22	109	169	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MAAAPYEQVM EDMLRGRDFA AQLQGLLRDS PKAGLIVDQI LNAFSRAIDA AKAMATEEGS 60 EVQSDVTCAG GGGGKRKAAA GGSGGDRGRA SRRRTQTASV KTVTTKDLDD GHAWRKYGQK 120 EIQNSKHPKA YFRCTHKFDQ QCLAQRQVQR CDEAPETYTV TYIGAHTCRD PATVARVVLH 180 HAGAEASALP AGSRLISFAP NGSTPATSTT TTTTTGNANQ QADHPEGAVL LRPGSGLPPL 240 KVEGVDQEEV LSSLTPAGSA RNPVATPGPD QGDVTSDLQF FGDGIGEIFT MDDGTFDLED 300 IFRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	5e-36	102	169	2	69	OsWRKY45
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962450.1	1e-113	probable WRKY transcription factor 70
TrEMBL	A0A0A9VCV7	1e-118	A0A0A9VCV7_ARUDO; Uncharacterized protein
STRING	Si022702m	1e-112	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7656	35	49