PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00032.1.g00290.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 362aa MW: 39811.8 Da PI: 9.5817

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00032.1.g00290.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.5	4.2e-14	73	146	1	79
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rWt+qe+l+Lie++r +e++ r + ++ + s+ + r+p+qC+++w+nl+++ykki+e e++ ++ ss + Zmw_sc00032.1.g00290.1.am.mk 73 RWTRQEILVLIEGKRVVERSGRGR----GRGRGRSRGGGGGXXDRGPVQCRKRWSNLAGDYKKIRECERGA-DGPSSFW 146 8**************9988865....677777999999**************************986.4444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MRSLASRPCD CWEADWWRVD CRGAPSRPCM LTVWPLRARE RGSRARSSST FAGMSDAGEA 60 GAAGKGRAQR LPRWTRQEIL VLIEGKRVVE RSGRGRGRGR GRSRGGGGGX XDRGPVQCRK 120 RWSNLAGDYK KIRECERGAD GPSSFWAMRS DARKERRLPG FFDREVYDIL EGRGAGGSNN 180 AVVPRVDLEL EEGKERQRPV AVVDHSGARA ATDGLFSSSS DEDDDDDHDE AATPPAVPTP 240 ALPPAQVFVP DSEKTTELPR IERSEQGTSK RKGLDGLTDD SPVQGQQKRQ RNGDEGSGRA 300 TTDLQGQLLH ILDRSGRMVA TQLEAQNINS RLDREQRKDQ ASSLLGVLGK MADALYRIAD 360 KL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MRSLASRPCD CWEADWWRVD CRGAPSRPCM LTVWPLRARE RGSRARSSST FAGMSDAGEA  60
GAAGKGRAQR LPRWTRQEIL VLIEGKRVVE RSGRGRGRGR GRSRGGGGGX XDRGPVQCRK  120
RWSNLAGDYK KIRECERGAD GPSSFWAMRS DARKERRLPG FFDREVYDIL EGRGAGGSNN  180
AVVPRVDLEL EEGKERQRPV AVVDHSGARA ATDGLFSSSS DEDDDDDHDE AATPPAVPTP  240
ALPPAQVFVP DSEKTTELPR IERSEQGTSK RKGLDGLTDD SPVQGQQKRQ RNGDEGSGRA  300
TTDLQGQLLH ILDRSGRMVA TQLEAQNINS RLDREQRKDQ ASSLLGVLGK MADALYRIAD  360
KL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	103	RGRGRGRGRSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826049.1	1e-112	trihelix transcription factor ASR3-like isoform X2
TrEMBL	A0A2S3I663	1e-110	A0A2S3I663_9POAL; Uncharacterized protein
STRING	Si010590m	1e-100	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3915	26	48