PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc00026.1.g00500.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 759aa MW: 83272.8 Da PI: 7.723

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00026.1.g00500.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	51.5	2.9e-16	78	148	2	72
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardP 72 C aC+++rrkC++dCv+ap+f ++ ++f ++ + FGas v++ l++ ++ er +a++ lv A a + P Zmw_sc00026.1.g00500.1.am.mk 78 CVACRHMRRKCEPDCVFAPHFGPDDGERFGALDRAFGASFVSQQLADREPRERAAAIEMLVRIAIASVPRP 148 9********************************************************99998887777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.63	76	176	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-15	78	148	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
LIDCRAAASD PSSLSPSPRR RSSSTAGGKQ PLLAAGSFGF ERARMRSVCF VSFRSLLTPN 60 RCSISDAMAS SEEAEKVCVA CRHMRRKCEP DCVFAPHFGP DDGERFGALD RAFGASFVSQ 120 QLADREPRER AAAIEMLVRI AIASVPRPAG VKAQQEAAAA QISREQALIR QYHTGTGFGV 180 PAYQSAEYQA MIASHQEMLM RNAGAVYQPL ELEELLQGAA AKQKSTLQPV AELQQQRTAA 240 EEVARHHDMV MRQAAAAQNY QALGLEQQRE GAAAKQKSIL QPVAELQQQR TAADVVARYH 300 DMVMRQAAAA VQNYQALGLE QQREGAAAKQ KSMLQPVAEL QQQRTAADVV ARYHDMVMRQ 360 AAAAVQNYQA LGLEQQREGA AAKQKSMLQP VAELQQQRTA AGEVARYHDM MMRQAAAAAA 420 AVQNYQALGL EQQRESAAAK QKSMLQPVAE LQQERTAADE VARHHAMMMR QAAAAQNYLG 480 IEQQREGAAA KQKSMLQPVA ELQQQRTAAE EVTRHHDKMM QQAAAAQNYQ ALGLEQQHQN 540 RQLAEGVMHQ TELTAEAAKR ATAEEAAGVR EVDMVLQSLR QAAVEEQYMD NYLRAVMLET 600 VADGQQQQHP LHHDQAGQNA AMLQQKLAQG IVNTQKIDQQ IAIAQQHWEK KLTTMQQAAA 660 NVPAMRGEQP QPQRQTRNAQ FQKESSLPPL PTQPRHAGGA SGARTMPFLP GRSADSEAFL 720 VQPSLPSLPP SLADTPRQQQ NDGGNEDLSV DPTLRLWNH

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

LIDCRAAASD PSSLSPSPRR RSSSTAGGKQ PLLAAGSFGF ERARMRSVCF VSFRSLLTPN  60
RCSISDAMAS SEEAEKVCVA CRHMRRKCEP DCVFAPHFGP DDGERFGALD RAFGASFVSQ  120
QLADREPRER AAAIEMLVRI AIASVPRPAG VKAQQEAAAA QISREQALIR QYHTGTGFGV  180
PAYQSAEYQA MIASHQEMLM RNAGAVYQPL ELEELLQGAA AKQKSTLQPV AELQQQRTAA  240
EEVARHHDMV MRQAAAAQNY QALGLEQQRE GAAAKQKSIL QPVAELQQQR TAADVVARYH  300
DMVMRQAAAA VQNYQALGLE QQREGAAAKQ KSMLQPVAEL QQQRTAADVV ARYHDMVMRQ  360
AAAAVQNYQA LGLEQQREGA AAKQKSMLQP VAELQQQRTA AGEVARYHDM MMRQAAAAAA  420
AVQNYQALGL EQQRESAAAK QKSMLQPVAE LQQERTAADE VARHHAMMMR QAAAAQNYLG  480
IEQQREGAAA KQKSMLQPVA ELQQQRTAAE EVTRHHDKMM QQAAAAQNYQ ALGLEQQHQN  540
RQLAEGVMHQ TELTAEAAKR ATAEEAAGVR EVDMVLQSLR QAAVEEQYMD NYLRAVMLET  600
VADGQQQQHP LHHDQAGQNA AMLQQKLAQG IVNTQKIDQQ IAIAQQHWEK KLTTMQQAAA  660
NVPAMRGEQP QPQRQTRNAQ FQKESSLPPL PTQPRHAGGA SGARTMPFLP GRSADSEAFL  720
VQPSLPSLPP SLADTPRQQQ NDGGNEDLSV DPTLRLWNH

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36265	3	4