PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00018.1.g00580.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 252aa    MW: 26345 Da    PI: 4.2317
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00018.1.g00580.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.4e-0913362448
                                  HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                                  W++Ia +++ gRt++++k++w+++l
  Zmw_sc00018.1.g00580.1.sm.mk 13 WSLIAGHLP-GRTDNEIKNYWNSHL 36
                                  *********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.626140IPR017930Myb domain
SuperFamilySSF466897.83E-71239IPR009057Homeodomain-like
CDDcd001671.65E-61336No hitNo description
Gene3DG3DSA:1.10.10.603.2E-121336IPR009057Homeodomain-like
PfamPF002491.4E-61336IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MCLPAAAGLE LAWSLIAGHL PGRTDNEIKN YWNSHLSRRA ADFRDVVVVD VDLSKLPGGG  60
RTSRGAAATA KGAKEKKARG KAKEKVPLPP HDATKGQAEA EDSSHSDPPT PSSQPCHTQS  120
EEHAQASASG VTSDGLEDGP LGLSEEMVSG CPGFVGPNLM TTGSDGACMD HESGLSMNRD  180
SVPNSGPSGD VAQELGEIKA LEDWDLAGLD ISVDDDMWGS GSLVWDYDGM GVVLEGGQQG  240
ELMSDLFFLD NV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819210.17e-62myb-related protein P-like
TrEMBLA0A0A9JQV16e-69A0A0A9JQV1_ARUDO; Uncharacterized protein
STRINGPavir.Eb02286.1.p7e-61(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3289934