PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00014.1.g00700.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 426aa    MW: 46313.1 Da    PI: 9.4734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00014.1.g00700.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042130150323
                                   ETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                   C++C+ksF++  +L  H+ +H
  Zmw_sc00014.1.g00700.1.am.mk 130 CKYCKKSFPSGRSLGGHMAMH 150
                                   ******************999 PP
2zf-C2H216.81.8e-05202223223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                   +C+ C k+F +++ L  H+r+H
  Zmw_sc00014.1.g00700.1.am.mk 202 ECQLCFKVFASSDALSMHMRVH 223
                                   6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.3E-8128152IPR007087Zinc finger, C2H2
SMARTSM003552.7128150IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.78E-7128150No hitNo description
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
SuperFamilySSF576672.78E-7196223No hitNo description
PfamPF139120.0032201223IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.448201228IPR007087Zinc finger, C2H2
SMARTSM003550.012201223IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4202225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280203225IPR007087Zinc finger, C2H2
PfamPF139123.9E-7340362IPR007087Zinc finger, C2H2
SMARTSM003550.23340362IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868340362IPR007087Zinc finger, C2H2
PROSITE patternPS000280342362IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MSEFWRHRSA AHILAGTPTA VRSSANASRP TARPSRKPGC RQLPSTAPPF QTPKAWLFPS  60
KSGKEHPPTS AARCNGRKAA AAAALGGLLL PAAARNPSGF RWVLQSPSTG QDSGTEVSGG  120
MPPRGMKHWC KYCKKSFPSG RSLGGHMAMH RKRLKKQPSS TPALSSADGG ACRYGLREKR  180
HKTWLMCDSS DDEYLTLLPK TECQLCFKVF ASSDALSMHM RVHTHHQQTM VANKVEESTE  240
GKGCGLRDFT VSTPVVLTYG DQEVGAARIL LMLSRHSDMC SASVECCNED YERDSNSVYH  300
VQQSESQSGD DEPMKPENCS SDGRMKFSSS SNVLKATAIH KCKLCSRVFT SGNALGGHQK  360
FHKFHGHRKV QSTPNSAAAE TGHLVEEDNR SLSLNPSSSS SDRNYSGTIG KSELNLWLDA  420
SSILSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796823.11e-100uncharacterized protein LOC112876858
RefseqXP_025796824.11e-100uncharacterized protein LOC112876858
TrEMBLA0A3L6S7667e-99A0A3L6S766_PANMI; Uncharacterized protein
STRINGPavir.Ib03920.1.p1e-103(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921