PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00013.1.g00530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 453aa MW: 48480.8 Da PI: 11.2014 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 66.9 | 4.2e-21 | 196 | 285 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtses 75 +Wt++e+laLiea+r+++e lr+g+l++++W++v++++ + ++ +qC++k+e+l+kry++++ ++ +r+++ Zmw_sc00013.1.g00530.1.am.mk 196 CWTHEETLALIEAYRDRWEMLRKGNLRAADWDDVADAVtsrcgrFPTAAPKTGVQCRHKIEKLRKRYRAERGRSAGRSKG- 275 8*************************************998887778889*************************98443. PP trihelix 76 sstcpyfdqle 86 ++p+++ l+ Zmw_sc00013.1.g00530.1.am.mk 276 -PKWPFYQLLH 285 .47****9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.2E-21 | 195 | 285 | No hit | No description |
PROSITE profile | PS50090 | 6.04 | 197 | 259 | IPR017877 | Myb-like domain |
SMART | SM00595 | 6.6E-6 | 204 | 292 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
LLPPAAGFPI RRKKSGRGRP RPTGEKARRG GHHHPPRPDT ALGHRGTDSA QCGAASSSSL 60 PSAAALRLHD KPLGGTTAPL RPPPHAAAQR WCRSPAGHFT ARPTPAAHHR TAPPLPPPPP 120 PYYDRFRSSS VPHLHHQTVD AFAAADRPSR DDAVSSPDLP PLAAPVAAAA AAAAAAASSG 180 GGGLGGGSGR RLPPPCWTHE ETLALIEAYR DRWEMLRKGN LRAADWDDVA DAVTSRCGRF 240 PTAAPKTGVQ CRHKIEKLRK RYRAERGRSA GRSKGPKWPF YQLLHVLAGN GAPDPSPNAI 300 VKIKTKGRSP PAAPPSPVSS PSSEEEAVRS RSLHGLISNG GAGSGLRFTI PKASRTRPSS 360 AAATRPDKSS NQGDTESEAM SEVAAALRAV GEGFVRMEER RLELSLQREK ERMEFEMKRT 420 QTMLDAQQLF LEAFLGKQHL PHKKARVSPA MED |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659928.1 | 1e-150 | trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A1X7YE92 | 1e-149 | A0A1X7YE92_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G428470_P01 | 1e-150 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5689 | 32 | 50 |