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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00013.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 22261.9 Da PI: 7.0745 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 54 | 104 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+W+AeIrdp+ + r++lg++ tae Aa+a+++a+++++g+ Zmw_sc00013.1.g00080.1.am.mk 54 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARSIRGA 104 6********.**********75....44*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.84E-22 | 54 | 112 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-32 | 54 | 112 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.63E-19 | 54 | 113 | No hit | No description |
PROSITE profile | PS51032 | 24.21 | 54 | 111 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-36 | 54 | 117 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 55 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MCGGAIIYDY IPARRRVSSA DFWPDDSDES DHHHHHTAER AAARPKARRE RKNQYRGIRQ 60 RPWGKWAAEI RDPVKGVRVW LGTYPTAEAA ARAYDRAARS IRGAKAKVNF PNDVAAPKAA 120 PAAAAAPPAP APKVEPSDEV KELSEELMAY ENYMNFLGIP YMEGGNAAAP AAAAVEEPSA 180 PAPVSGLWSF EDYYQPSLAL FTE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 54 | 114 | 5 | 66 | ATERF1 |
3gcc_A | 2e-21 | 54 | 114 | 5 | 66 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131773.1 | 3e-82 | uncharacterized protein LOC100193143 | ||||
TrEMBL | B4FDY9 | 7e-81 | B4FDY9_MAIZE; Ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | K4JRM4 | 7e-81 | K4JRM4_MAIZE; AP2-EREBP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G169382_P01 | 1e-81 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11547 | 25 | 40 |