PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00009.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 523aa    MW: 55829.6 Da    PI: 8.369
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00009.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.39.6e-14126162339
                                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
                        SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 
                                   i ++ +r  t+s+Rr+g  KKAeELS+LC+++va++ 
  Zmw_sc00009.1.g00170.1.am.mk 126 IASQKKRAATLSRRREGFKKKAEELSILCGVRVAIVC 162
                                   8899******************************874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.09E-16115189IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.301116161IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-12116175IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-5118138IPR002100Transcription factor, MADS-box
CDDcd002661.69E-20118177No hitNo description
PfamPF003196.1E-13126162IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-5138153IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MVHGAPASPR YVSKTELHEI NRRLRAPHTP AASFAWLITR LVRLTLTLTR LLGGKEPTRP  60
RSLRRACRAG PRLVSSAASL LYIRSRLPPR RPARACGGTF RFASVESSRR AREGTMPRRK  120
IPMELIASQK KRAATLSRRR EGFKKKAEEL SILCGVRVAI VCGADGAAPP VVWESEEGVL  180
NAYRALPDAA RAAHTFRAYA DAELGKEAAK LARVRQGGPA ALSCWDKALE GLDAEEARRV  240
LEDVDAAIAA AEDRRVALGL PALLDDSGGL FDGVAPLSHA VRTFGGGNFV DVEESALGAQ  300
GLGGGDANGG RYEQAVWTND VRAAAMQPSY GFHQYPAGGG GANMDGYQLQ MAAGMNGYQL  360
QMAADLNGYQ LQMAADLNGY SDNNDTCIIS WDGIQPCSGG LPHLGYASQC YGGMSGYRTQ  420
HVSSTGAGYP SFDIGHGYID TPVGNNAQSY AGNFVNAPPA LSHTMGTGDN FSNAAPAHSY  480
TTQQPAAQQQ IQSATSSQQS LSGIEQLHYF SDVDDAQLQF WGN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960