PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc00005.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 606aa MW: 68516.9 Da PI: 4.8499

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00005.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	241.7	3.1e-74	238	558	3	321
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 +lL++cA+av++++++ a +lL+++++ as +g+++qRla +f+++L+arla+++++l + ++ s ++e l a++l Zmw_sc00005.1.g00200.1.am.mk 238 TLLTHCAQAVAANNHASAWQLLNQIKQDASTTGNATQRLARCFAKGLEARLAGTGTQLWQFRMGEPPS---TVEYLEAYQL 315 68*************************************************999999766666665...99**** PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQ..WpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 ++ v+ + k++ ++I++ + g+++vHi+D+++ + +Q W+ Ll+ La+R++g+p+++iT++++p + +e++ee Zmw_sc00005.1.g00200.1.am.mk 316 YVSVCSFDKVALCFSVKTIVDTIVGKSKVHIVDYGLDYAFQlrWADLLELLANREGGSPEVKITAINHPGHWfyPEEQMEE 396 *******************************99998888*********************99889**** PP GRAS 161 tgerLakfAeelgvp.fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkv 238 tg+rL+k A+elg++ f+f++ + k++ed+ +++L+++++E+l+Vn +++l +l+desv ++ +rd+vL+ + +++P v Zmw_sc00005.1.g00200.1.am.mk 397 TGSRLHKWAAELGLRyFKFHT-IRKKWEDVCIQDLDTESNEVLIVNDHFNLSTLMDESVFFDDpcPRDAVLSNIAKMRPAV 476 **********77*.7********************************9999999*********** PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319 v+ ++ + ++sFl rf al yy+alfd+l+a++pres++r+++E+el+g +vn++a eg + ++ e++ +W++r Zmw_sc00005.1.g00200.1.am.mk 477 VIQNVVNCTY-GTSFLSRFRGALFYYMALFDMLDATIPRESKQRVVLEQELFGGYAVNAIASEGVNVVQHPEKYTQWQARN 556 99999999.679****************************************************************996 PP GRAS 320 ee 321 ++ Zmw_sc00005.1.g00200.1.am.mk 557 QR 558 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.322	210	591	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-71	238	558	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence Send to blast
MTPTPEEFFV HCLMEQSPPS PSLCPDLPPL PDAYGEGWLF PNEMMLPHIS RMLMEDDTEE 60 KLSDDPALLR VQQPFAEILF DPSFGTDMGN TEGPMDLMQD GSCYQMTAES AFAKGADAVG 120 AFLRGMEEAK TFLPKYGCFR EDDLVSQLFR ESTNHGGPRT NNSKDEAAVS MTDEPMTMTK 180 EQAERDDASE MLDRMMLQGC EKFVRDMEKL RITMANEAEE DRRKDRSNTA RVVVDLPTLL 240 THCAQAVAAN NHASAWQLLN QIKQDASTTG NATQRLARCF AKGLEARLAG TGTQLWQFRM 300 GEPPSTVEYL EAYQLYVSVC SFDKVALCFS VKTIVDTIVG KSKVHIVDYG LDYAFQLRWA 360 DLLELLANRE GGSPEVKITA INHPGHWFYP EEQMEETGSR LHKWAAELGL RYFKFHTIRK 420 KWEDVCIQDL DTESNEVLIV NDHFNLSTLM DESVFFDDPC PRDAVLSNIA KMRPAVVIQN 480 VVNCTYGTSF LSRFRGALFY YMALFDMLDA TIPRESKQRV VLEQELFGGY AVNAIASEGV 540 NVVQHPEKYT QWQARNQRAV RCRTMAPCRR SPPMATPPPA PHRNSLVALP SLMMQESRRE 600 RRGEVP

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence Send to blast

MTPTPEEFFV HCLMEQSPPS PSLCPDLPPL PDAYGEGWLF PNEMMLPHIS RMLMEDDTEE  60
KLSDDPALLR VQQPFAEILF DPSFGTDMGN TEGPMDLMQD GSCYQMTAES AFAKGADAVG  120
AFLRGMEEAK TFLPKYGCFR EDDLVSQLFR ESTNHGGPRT NNSKDEAAVS MTDEPMTMTK  180
EQAERDDASE MLDRMMLQGC EKFVRDMEKL RITMANEAEE DRRKDRSNTA RVVVDLPTLL  240
THCAQAVAAN NHASAWQLLN QIKQDASTTG NATQRLARCF AKGLEARLAG TGTQLWQFRM  300
GEPPSTVEYL EAYQLYVSVC SFDKVALCFS VKTIVDTIVG KSKVHIVDYG LDYAFQLRWA  360
DLLELLANRE GGSPEVKITA INHPGHWFYP EEQMEETGSR LHKWAAELGL RYFKFHTIRK  420
KWEDVCIQDL DTESNEVLIV NDHFNLSTLM DESVFFDDPC PRDAVLSNIA KMRPAVVIQN  480
VVNCTYGTSF LSRFRGALFY YMALFDMLDA TIPRESKQRV VLEQELFGGY AVNAIASEGV  540
NVVQHPEKYT QWQARNQRAV RCRTMAPCRR SPPMATPPPA PHRNSLVALP SLMMQESRRE  600
RRGEVP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-26	240	553	8	315	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978278.1	0.0	scarecrow-like protein 33
TrEMBL	K3ZDK1	0.0	K3ZDK1_SETIT; Uncharacterized protein
STRING	Si024639m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297