PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc13070.1.g00030.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 497aa MW: 53519.4 Da PI: 7.9797

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc13070.1.g00030.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1e-06	247	269	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ f+ C++Gd C FaHg Zjn_sc13070.1.g00030.1.sm.mk 247 VPCDSFRLADGCPRGDACDFAHG 269 79999*99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12796	3.9E-8	46	130	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.9E-16	59	142	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.15E-14	59	141	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.149	62	137	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	5.6	62	92	IPR002110	Ankyrin repeat
CDD	cd00204	1.47E-13	64	140	No hit	No description
PROSITE profile	PS50088	12.502	97	132	IPR002110	Ankyrin repeat
SMART	SM00248	0.0011	97	129	IPR002110	Ankyrin repeat
PROSITE profile	PS50103	11.76	243	271	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.75E-5	243	272	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.9E-6	243	270	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.021	243	270	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-4	275	306	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	20	279	302	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS51082	7.605	420	439	IPR003124	WH2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003779	Molecular Function	actin binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MVDGHADHAR GAGRPERLSS LLDLAAADDA AGFRAALNAA GSEAAELVDE VELWYGRSKA 60 YEPRTPLMVA ATCGSAAVVA LLLGLGCVDV NRRPGIDGAT ALHCAASGGS PNAVAVVRLL 120 LAAGADPAIP DSAGRVPADV VHAHPASPDT LAGLEALLGR RRELSPVSAL VYTTTANGGG 180 NKKAYPVDPT LPDMSSSVYA SDEFRMFALK VQPCARAYAH EWTECPFVHP GENARRRDPR 240 RHAYTAVPCD SFRLADGCPR GDACDFAHGV FESWLHPSRY RTRLCRDGAA CSRRICFFAH 300 AEHELRYVSR DGASTALLSP RTMDDMAAAA TLGLQFPRSP TGGHFLQQGR KRYAAFDACL 360 EEQVDELSAL FDFASLSRSQ PRLASIRRPS AAPPLTYMAL LPSRFGNDHG ASVYSPQPAQ 420 TSQLLARIRQ QQGVRLSPVK QREMFERPFS CPTLKHHHLR SPPVTARGYS DASWINAGCP 480 GSKVDWSFNA EELLRSP

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MVDGHADHAR GAGRPERLSS LLDLAAADDA AGFRAALNAA GSEAAELVDE VELWYGRSKA  60
YEPRTPLMVA ATCGSAAVVA LLLGLGCVDV NRRPGIDGAT ALHCAASGGS PNAVAVVRLL  120
LAAGADPAIP DSAGRVPADV VHAHPASPDT LAGLEALLGR RRELSPVSAL VYTTTANGGG  180
NKKAYPVDPT LPDMSSSVYA SDEFRMFALK VQPCARAYAH EWTECPFVHP GENARRRDPR  240
RHAYTAVPCD SFRLADGCPR GDACDFAHGV FESWLHPSRY RTRLCRDGAA CSRRICFFAH  300
AEHELRYVSR DGASTALLSP RTMDDMAAAA TLGLQFPRSP TGGHFLQQGR KRYAAFDACL  360
EEQVDELSAL FDFASLSRSQ PRLASIRRPS AAPPLTYMAL LPSRFGNDHG ASVYSPQPAQ  420
TSQLLARIRQ QQGVRLSPVK QREMFERPFS CPTLKHHHLR SPPVTARGYS DASWINAGCP  480
GSKVDWSFNA EELLRSP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006657856.1	1e-167	PREDICTED: zinc finger CCCH domain-containing protein 50
Refseq	XP_015695270.1	1e-167	PREDICTED: zinc finger CCCH domain-containing protein 50
Swissprot	Q84SL2	1e-164	C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBL	A0A0E0ED94	1e-166	A0A0E0ED94_9ORYZ; Uncharacterized protein
TrEMBL	J3MM59	1e-165	J3MM59_ORYBR; Uncharacterized protein
STRING	OB07G24910.1	1e-166	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP823	37	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-78	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]