![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc10282.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 103aa MW: 10980.3 Da PI: 10.0273 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 31.3 | 2.6e-10 | 3 | 69 | 108 | 173 |
GRAS 108 geervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelg 173 ++++H +Dfd+s + Q +aL q La p+ sl++T++ +p+s ++ +l +++erL+k+A+++g Zjn_sc10282.1.g00010.1.sm.mk 3 DHRAIHLVDFDVSAP-QHAALVQYLAGVPG--TSLKVTAITDPTSPfaqsQTATLPAVEERLKKLADRVG 69 5689********987.99********9655..59********998889999999************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 9.424 | 1 | 103 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.0E-8 | 3 | 69 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 103 aa Download sequence Send to blast |
VGDHRAIHLV DFDVSAPQHA ALVQYLAGVP GTSLKVTAIT DPTSPFAQSQ TATLPAVEER 60 LKKLADRVGN AGLDDGGSQG RGRRELLQHP CSAQSQKGTR RQR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008668998.1 | 2e-28 | scarecrow-like protein 8 | ||||
TrEMBL | A0A060CY61 | 5e-27 | A0A060CY61_MAIZE; GRAS transcription factor (Fragment) | ||||
STRING | GRMZM2G109869_P01 | 8e-28 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP24922 | 3 | 6 |