PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc04161.1.g00010.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 316aa MW: 33360.7 Da PI: 9.7916

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc04161.1.g00010.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	104.9	4.6e-33	1	48	14	61
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++tkfCy+nny++sqPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ Zjn_sc04161.1.g00010.1.am.mk 1 MDTKFCYFNNYNVSQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNA 48 69*******************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.2E-26	1	47	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-21	1	46	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	24.456	1	47	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MDTKFCYFNN YNVSQPRHFC KNCQRYWTAG GAMRNVPVGA GRRKNKNAVA ASHFLQKVRA 60 AVPVGGDPLK TNGTVLSFGA HGAAPALDLA EQVVGHLKEK MLVPVGNAGN HQSVVDPCSD 120 VSSTRDAKNL SVNGVQHPAN MNGGATMWPY GCAPPSQAYY PSGIAIPIYP AAPGYWGCMV 180 PGGWSPLPWP LQPPTQGLSS PTSTAPSVSS GAGHSLTLGK HAREGDEGRS HGSGKVWAPK 240 TIRIGDADEV AKSSIWSLIG IKGDKQNTDT DGRKNGTVFE PKHEAKSAKQ AMITSSPLLH 300 ANPVALTRSL TFQEGS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582399	1e-73	KC582399.1 Sorghum bicolor dof2 protein (dof2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983151.1	1e-159	cyclic dof factor 1
TrEMBL	A0A1D8RJ51	1e-168	A0A1D8RJ51_ELECO; Dof transcription factor family protein (Fragment)
STRING	Si035787m	1e-159	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-50	cycling DOF factor 2