PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc04028.1.g00020.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 66aa MW: 7394.65 Da PI: 11.5047 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.7 | 2.3e-26 | 12 | 61 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl ++s Zjn_sc04028.1.g00020.1.sm.mk 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLSHFAS 61 89********************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.114 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.2E-32 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.41E-25 | 5 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-24 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-25 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-24 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-24 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 66 aa Download sequence Send to blast |
MAGKRERMAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLSHFA 60 SSRIEA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ009259 | 1e-75 | FJ009259.1 Saccharum officinarum MADS box protein mRNA, complete cds. | |||
GenBank | FJ608826 | 1e-75 | FJ608826.1 Saccharum arundinaceum MADS box transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793840.1 | 2e-34 | MADS-box transcription factor 47-like isoform X1 | ||||
Refseq | XP_025793841.1 | 2e-34 | MADS-box transcription factor 47-like isoform X1 | ||||
Refseq | XP_025793842.1 | 2e-34 | MADS-box transcription factor 47-like isoform X1 | ||||
Refseq | XP_025793844.1 | 2e-34 | MADS-box transcription factor 47-like isoform X2 | ||||
Swissprot | Q5K4R0 | 3e-33 | MAD47_ORYSJ; MADS-box transcription factor 47 | ||||
TrEMBL | A0A1E5VFN4 | 2e-33 | A0A1E5VFN4_9POAL; MADS-box transcription factor 47 | ||||
TrEMBL | A0A3L6SC43 | 3e-33 | A0A3L6SC43_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ia04527.1.p | 5e-34 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 1e-27 | AGAMOUS-like 24 |
Publications ? help Back to Top | |||
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