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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc02090.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 189aa MW: 20531.2 Da PI: 4.5655 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 48.2 | 2.1e-15 | 120 | 156 | 23 | 59 |
EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +YYrC+ gC vkk+ver+++dp++v++tY g Hnh Zjn_sc02090.1.g00010.1.sm.mk 120 NYYRCSADGCGVKKRVERDRDDPRYVITTYDGVHNHA 156 8***********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-16 | 99 | 158 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-17 | 103 | 158 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.244 | 106 | 158 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-16 | 111 | 157 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-10 | 117 | 155 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MAASLGLNRE AEAFFNPCSA YSASSPFTTA SDYTASFPTS EPVDGTAFFA ELDDDRRLFD 60 FEYSPAAASI FAGNAGDRDD DNEKMRYAGD EKGARVNGRI GFRTRSEVEI LDDGFKWRKN 120 YYRCSADGCG VKKRVERDRD DPRYVITTYD GVHNHASPAA AIVQYGGDAG AQGFYSSPNS 180 GSPPAAASY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-18 | 97 | 159 | 3 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-18 | 97 | 159 | 3 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085266 | 6e-40 | BT085266.2 Zea mays full-length cDNA clone ZM_BFb0348H08 mRNA, complete cds. | |||
GenBank | BT086427 | 6e-40 | BT086427.1 Zea mays full-length cDNA clone ZM_BFc0165H01 mRNA, complete cds. | |||
GenBank | HQ858773 | 6e-40 | HQ858773.1 Zea mays clone UT1759 WRKY transcription factor mRNA, partial cds. | |||
GenBank | KU058609 | 6e-40 | KU058609.1 UNVERIFIED: Panicum miliaceum WRKY15-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440727.1 | 1e-62 | probable WRKY transcription factor 50 | ||||
TrEMBL | C5YU85 | 2e-61 | C5YU85_SORBI; Uncharacterized protein | ||||
STRING | Sb09g005700.1 | 4e-62 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 1e-30 | WRKY DNA-binding protein 50 |