PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00536.1.g00010.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 88aa MW: 9958.53 Da PI: 10.3199 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.4 | 1.1e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +i+fsstg+lye++s Zjn_sc00536.1.g00010.1.sm.mkhc 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIVFSSTGRLYEFCS 59 8***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.1E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.057 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.50E-46 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-33 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLIVFSS TGRLYEFCST 60 DMKAVIERYA KAKEEQLGAN NATSELMW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-24 | 1 | 82 | 1 | 82 | MEF2C |
5f28_B | 8e-24 | 1 | 82 | 1 | 82 | MEF2C |
5f28_C | 8e-24 | 1 | 82 | 1 | 82 | MEF2C |
5f28_D | 8e-24 | 1 | 82 | 1 | 82 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241644 | 7e-69 | AK241644.1 Oryza sativa Japonica Group cDNA, clone: J065189M04, full insert sequence. | |||
GenBank | AY177702 | 7e-69 | AY177702.1 Oryza sativa (japonica cultivar-group) transcription factor MADS57 mRNA, complete cds. | |||
GenBank | CT835372 | 7e-69 | CT835372.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315544.1 | 8e-52 | MADS-box transcription factor 57-like isoform X3 | ||||
Swissprot | Q6Z6W2 | 4e-46 | MAD57_ORYSJ; MADS-box transcription factor 57 | ||||
TrEMBL | A0A1Z5RNZ6 | 2e-50 | A0A1Z5RNZ6_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ab02921.1.p | 3e-50 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 5e-43 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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