PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00430.1.g00010.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 700aa MW: 73218.9 Da PI: 10.7759

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00430.1.g00010.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	34	6.3e-11	530	554	2	26
G2-like 2 prlrWtpeLHerFveaveqLGGsek 26 pr+rWt++LH+rFv+ave LGG+e+ Zjn_sc00430.1.g00010.1.am.mk 530 PRMRWTSTLHARFVHAVEVLGGHER 554 9*********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-7	528	554	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MLVHGLGSRH IAGRWPVSIE ATKRSNGIQF RSLKRKSLHS NQAADRGASI RRQRQRQFVS 60 AAAAQLLVND ASSLITALIM PGGGGAAVSS WSKPRSSLCL PGGMGNGTGL KLAATVNLLH 120 VSTWTHSGGV KLGSLCPCGH VPKDKRKKKN GIDGAINPVD SKVAGCRLLR ETHGKPARSY 180 MATETAAVRS CERSMVQAQL LELPDTKHTE KEAPHSGDVD TTKQKQKQTP PENARTFLSL 240 ASCAAKHFPF HPSLPYLSKG RGSSPLAPRR RERGAASMEA TASAPDLSLH ISLPSGNAAS 300 PSSAPGLGAG GVVGGRGAAG SPGGDPWRRL NGSTASTELS LSPPQRQQEG AASALPWRLR 360 PSTAANAPSS SSSASSAEAA AFLPVTVPRL SLDAAASAEA ARGRPINGVP VYSSPGAGSS 420 PFLGAGDYRQ RQPKVGLYNP YPSSAWPSSL RSTTAAVPAP VDTTTAAFHH SPSAYHRMLS 480 GTGRLHLHGA LADTLRSYGA GHQQYFGSSL ASSRYVPRFP AASRRGMRAP RMRWTSTLHA 540 RFVHAVEVLG GHEREWCDAQ VGAGADGREG SDASACEEPF AGKRAITSRP MQQLKLNARE 600 RKPGVLVHLR LSRLTMQAAA IPRESEEGEP RPIDGGGSGD DDLPNAEQAQ SAGDLNRQPF 660 AGLGRSASSE GATSQFGGGD VECSSADDSD GSRVRSTSSR

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MLVHGLGSRH IAGRWPVSIE ATKRSNGIQF RSLKRKSLHS NQAADRGASI RRQRQRQFVS  60
AAAAQLLVND ASSLITALIM PGGGGAAVSS WSKPRSSLCL PGGMGNGTGL KLAATVNLLH  120
VSTWTHSGGV KLGSLCPCGH VPKDKRKKKN GIDGAINPVD SKVAGCRLLR ETHGKPARSY  180
MATETAAVRS CERSMVQAQL LELPDTKHTE KEAPHSGDVD TTKQKQKQTP PENARTFLSL  240
ASCAAKHFPF HPSLPYLSKG RGSSPLAPRR RERGAASMEA TASAPDLSLH ISLPSGNAAS  300
PSSAPGLGAG GVVGGRGAAG SPGGDPWRRL NGSTASTELS LSPPQRQQEG AASALPWRLR  360
PSTAANAPSS SSSASSAEAA AFLPVTVPRL SLDAAASAEA ARGRPINGVP VYSSPGAGSS  420
PFLGAGDYRQ RQPKVGLYNP YPSSAWPSSL RSTTAAVPAP VDTTTAAFHH SPSAYHRMLS  480
GTGRLHLHGA LADTLRSYGA GHQQYFGSSL ASSRYVPRFP AASRRGMRAP RMRWTSTLHA  540
RFVHAVEVLG GHEREWCDAQ VGAGADGREG SDASACEEPF AGKRAITSRP MQQLKLNARE  600
RKPGVLVHLR LSRLTMQAAA IPRESEEGEP RPIDGGGSGD DDLPNAEQAQ SAGDLNRQPF  660
AGLGRSASSE GATSQFGGGD VECSSADDSD GSRVRSTSSR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ286528	1e-84	DQ286528.1 Zea mays KANADI1-like protein (kan1b) mRNA, partial cds.
GenBank	EU935003	1e-84	EU935003.1 Zea mays cultivar B73 kanadi1 (kan1) mRNA, complete cds.
GenBank	JX469982	1e-84	JX469982.1 Zea mays subsp. mays clone UT3342 G2-like transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820100.1	6e-96	probable transcription factor RL9 isoform X2
TrEMBL	A0A3L6RKZ8	1e-102	A0A3L6RKZ8_PANMI; Putative transcription factor RL9
STRING	Pavir.Fb00812.1.p	1e-106	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2558	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	2e-14	G2-like family protein