PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00314.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 176aa MW: 19911.1 Da PI: 8.5677 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102 | 8.1e-32 | 20 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lp Gf Fh +dee++++yL +kv ++++++ +i+e+ ++ +ekewyf++++ +ky++g r nrat++g Zjn_sc00314.1.g00010.1.sm.mk 20 LPLGFGFHLSDEEIITFYLMPKVLDSNFTA-IAIAEA--------KM------GEKEWYFYCQKVHKYQKGVRINRATNAG 85 699************************888.556663........33......789************************* PP NAM 82 yWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrle 129 +Wkatgkdk++++ ++ v +kktLvfy+g++p +ekt+W+mheyrle Zjn_sc00314.1.g00010.1.sm.mk 86 FWKATGKDKAIYQVSSMMpviVRMKKTLVFYTGKSPWSEKTEWIMHEYRLE 136 ************985444566****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.05E-39 | 17 | 141 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.356 | 20 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-21 | 21 | 135 | IPR003441 | NAC domain |
Pfam | PF06338 | 8.4E-5 | 92 | 133 | IPR010461 | Competence protein ComK |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0030420 | Biological Process | establishment of competence for transformation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MEDHKYEGIR GTVDDAGLNL PLGFGFHLSD EEIITFYLMP KVLDSNFTAI AIAEAKMGEK 60 EWYFYCQKVH KYQKGVRINR ATNAGFWKAT GKDKAIYQVS SMMPVIVRMK KTLVFYTGKS 120 PWSEKTEWIM HEYRLEGSDK LCCPSTSSNI SKAMTLCCGR DMQALAKCTV HGPVAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-28 | 8 | 135 | 2 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679478.1 | 8e-53 | protein CUP-SHAPED COTYLEDON 1 | ||||
Refseq | XP_025801540.1 | 5e-53 | NAC domain-containing protein 79-like | ||||
Swissprot | Q9LJW3 | 7e-45 | NAC59_ARATH; NAC domain-containing protein 59 | ||||
TrEMBL | A0A1E5V4C4 | 2e-53 | A0A1E5V4C4_9POAL; NAC domain-containing protein 79 | ||||
STRING | Si030284m | 7e-52 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP35136 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29035.1 | 3e-47 | NAC domain containing protein 3 |
Publications ? help Back to Top | |||
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