PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00233.1.g00030.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 444aa MW: 48784.5 Da PI: 9.7068

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00233.1.g00030.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61.6	2.1e-19	53	120	2	69
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69 CaaC +lr kC+++Cv+apyf +e+ ++fa+++ FGasnv+k++++ ++ er a++ l+y A r+ Zjn_sc00233.1.g00030.1.sm.mk 53 CAACTHLRLKCEPGCVFAPYFGSEDGERFAVLEGAFGASNVSKVVAEHEPGERAVAIKRLLYLATERV 120 ****************************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.819	51	152	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-17	53	120	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MDPKVPNCSR PCGAATEPSS PLSPSPSPSS TIAGVSSDAV VASSSEGERE KVCAACTHLR 60 LKCEPGCVFA PYFGSEDGER FAVLEGAFGA SNVSKVVAEH EPGERAVAIK RLLYLATERV 120 WGSSVPRGHA EKLPIQRARQ LTAAQQAAAT AQASREQALM MQYHAGIGFG VPAAHLPSYH 180 YQAMIARHHD MMMRQAAAAQ NYQAFGLEQQ RQGAAAKRKS MPQPVAELQR RRAAANEVLM 240 MQYHAGKEFG VPAGHLPSHQ ATEIERQQTA AAAVARHRDM KMRQAAVAMV YQALGLQRPR 300 QNQQLAEGVT HQNHHTALTA EAAKRSTAAD AAMVREIDKI LRFLRQAAVE EQYMNRCLSI 360 MMQQTVVDGQ QEHHHLGQDR AGKNAVIRRN IMKGIANRQY IDQNIKRVQQ YWEKELMMMM 420 EKAAANAPAM PGEQPQPQRQ TGNH

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MDPKVPNCSR PCGAATEPSS PLSPSPSPSS TIAGVSSDAV VASSSEGERE KVCAACTHLR  60
LKCEPGCVFA PYFGSEDGER FAVLEGAFGA SNVSKVVAEH EPGERAVAIK RLLYLATERV  120
WGSSVPRGHA EKLPIQRARQ LTAAQQAAAT AQASREQALM MQYHAGIGFG VPAAHLPSYH  180
YQAMIARHHD MMMRQAAAAQ NYQAFGLEQQ RQGAAAKRKS MPQPVAELQR RRAAANEVLM  240
MQYHAGKEFG VPAGHLPSHQ ATEIERQQTA AAAVARHRDM KMRQAAVAMV YQALGLQRPR  300
QNQQLAEGVT HQNHHTALTA EAAKRSTAAD AAMVREIDKI LRFLRQAAVE EQYMNRCLSI  360
MMQQTVVDGQ QEHHHLGQDR AGKNAVIRRN IMKGIANRQY IDQNIKRVQQ YWEKELMMMM  420
EKAAANAPAM PGEQPQPQRQ TGNH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-15	53	120	12	79	LOB family transfactor Ramosa2.1
5ly0_B	8e-15	53	120	12	79	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36281	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-16	LBD family protein