PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00213.1.g00150.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 291aa    MW: 29881.8 Da    PI: 10.9398
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00213.1.g00150.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.4e-30226284259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D y+WrKYGqK++kgs+fpr+YYrC++  gCp++k+ver+a d  ++++tYeg+H+h+
  Zjn_sc00213.1.g00150.1.sm.mk 226 SDDYAWRKYGQKPIKGSPFPRGYYRCSTVkGCPARKHVERDAADSATLVVTYEGDHRHD 284
                                   69************************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.8E-6168208IPR018872Zn-cluster domain
PROSITE profilePS5081131.582220286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-30220284IPR003657WRKY domain
SuperFamilySSF1182902.48E-25221284IPR003657WRKY domain
SMARTSM007747.8E-35225285IPR003657WRKY domain
PfamPF031064.8E-25227283IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAVDLMGRAF APTSAGEQLA FQEAAAAGLR SLELLASSLS PRAGRPAPLG EIADQAVSRF  60
RRVINLLDRT GHARFRRAPA AAAAVGAESP PASPRPAPEP VVFSQPASAA PKSLTLDFTK  120
PAAVPAMSAT STSFLSSVTA GGGGEGSVSK GQSLAVSSGK PPLPKRKHPC SAAAAAAAAT  180
AAAPAAHSAC HCSRKRRRHA TRTVRVPAPP ISASNPAATA PTDIPSDDYA WRKYGQKPIK  240
GSPFPRGYYR CSTVKGCPAR KHVERDAADS ATLVVTYEGD HRHDAGAAAR T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-212232841272WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193197RKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046482e-56AP004648.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_H02.
GenBankAP0149642e-56AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCT8359582e-56CT835958.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI102B05, full insert sequence.
GenBankCT8359592e-56CT835959.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI103A11, full insert sequence.
GenBankCT8419362e-56CT841936.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103L12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822145.12e-96WRKY transcription factor WRKY51-like
TrEMBLA0A1E5VBK61e-104A0A1E5VBK6_9POAL; Putative WRKY transcription factor 11
STRINGSi014163m7e-95(Setaria italica)
STRINGSb07g006980.11e-94(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.16e-33WRKY DNA-binding protein 15