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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00205.1.g00390.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 20196.1 Da PI: 11.9208 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.1 | 6.7e-16 | 2 | 47 | 7 | 56 |
AP2 7 rwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 r+++ +g+W+AeIrdp + +r++lg+f+t e Aa a++ a+++++g+ Zjn_sc00205.1.g00390.1.sm.mk 2 RQRP-WGKWAAEIRDP-----HraARVWLGTFDTVEAAALAYDVAALRFRGA 47 7899.**********7.....338*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.366 | 1 | 54 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-10 | 2 | 46 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.28E-17 | 2 | 56 | No hit | No description |
SuperFamily | SSF54171 | 2.55E-19 | 2 | 56 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-28 | 2 | 56 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-26 | 2 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MRQRPWGKWA AEIRDPHRAA RVWLGTFDTV EAAALAYDVA ALRFRGARAK LNFPESAALP 60 TAPTVPQAAS EPPPARPEGV LESQAAMMMG DGGGEYAEST PGSCRAPANR QGSLTRRWRA 120 RLRRHQRCRC PARLTISARR AAVPSIHRSC QFLVRALGGV RRRQETPQDD TCARAPTKIR 180 YR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-20 | 1 | 54 | 9 | 63 | ATERF1 |
3gcc_A | 6e-20 | 1 | 54 | 9 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120527 | 2e-52 | AC120527.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence. | |||
GenBank | AC147812 | 2e-52 | AC147812.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence. | |||
GenBank | AK107125 | 2e-52 | AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence. | |||
GenBank | AL713902 | 2e-52 | AL713902.2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AL844874 | 2e-52 | AL844874.1 Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014967 | 2e-52 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | AP014968 | 2e-52 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 2e-52 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. | |||
GenBank | CP012620 | 2e-52 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. | |||
GenBank | CU406355 | 2e-52 | CU406355.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109D06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006279688.1 | 1e-27 | ethylene-responsive transcription factor ERF114 | ||||
Refseq | XP_006296339.1 | 7e-28 | ethylene-responsive transcription factor ERF112 | ||||
Refseq | XP_015619856.1 | 2e-27 | ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | A0A0D3HRU8 | 6e-27 | A0A0D3HRU8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART12G04120.1 | 9e-28 | (Oryza barthii) | ||||
STRING | Bostr.23794s0729.1.p | 6e-28 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP47405 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 3e-23 | ethylene response factor 110 |