PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00205.1.g00380.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 262aa    MW: 27230.5 Da    PI: 9.0866
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00205.1.g00380.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.3e-2089138255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  Zjn_sc00205.1.g00380.1.sm.mkhc  89 RYRGVRQRP-WGKWAAEIRDP-----HraARVWLGTFDTAEAAARAYDVAALQFRG 138
                                     7********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-3589152IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2389148IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-3389148IPR001471AP2/ERF domain
PfamPF008476.4E-1489138IPR001471AP2/ERF domain
PROSITE profilePS5103225.94989146IPR001471AP2/ERF domain
PRINTSPR003675.3E-1290101IPR001471AP2/ERF domain
CDDcd000183.24E-1697148No hitNo description
PRINTSPR003675.3E-12112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MPLSQSRGDR EMSAMVSALS AVIAGEAAVA PEGASWACGA PSSAACYDYG SAAVATPYTP  60
PFATTASSPS PSAQLASPSS SSDARRRRRY RGVRQRPWGK WAAEIRDPHR AARVWLGTFD  120
TAEAAARAYD VAALQFRGAR AKLNFPESAA LPAPTAPRVA SVPPPPEWPE GVLESQAPMM  180
MGDGGEYAEY ARFLQGAGAP PTLVDQTVAR APQTPSAVPV PGAAHHFRPQ SSRSEPPPPL  240
PVPRPGFGWG PSPPPGDPSA SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2188146463ATERF1
3gcc_A2e-2188146463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205274e-54AC120527.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence.
GenBankAC1478124e-54AC147812.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence.
GenBankAP0149674e-54AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126194e-54CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619856.16e-42ethylene-responsive transcription factor ERF110
TrEMBLA0A3L6PN499e-41A0A3L6PN49_PANMI; Uncharacterized protein
STRINGONIVA12G03810.11e-38(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-19ethylene response factor 110