PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00180.1.g00260.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 184aa    MW: 20975 Da    PI: 4.849
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00180.1.g00260.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM22.53.2e-072055137
                           NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev 37
                                  lp Gf FhP+de ++++yL +k+ + ++++  +i+ev
  Zjn_sc00180.1.g00260.1.am.mk 20 LPLGFGFHPSDEKIITFYLMPKMLDGNFTA-VAIAEV 55
                                  699**********************99888.457766 PP
2NAM41.15.6e-13599296129
                           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                     ++vg+kktLvfy gr+p gekt+W+mheyrle
  Zjn_sc00180.1.g00260.1.am.mk  59 MPAVVGMKKTLVFYIGRSPWGEKTEWIMHEYRLE 92 
                                   45679***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.4721118IPR003441NAC domain
SuperFamilySSF1019418.76E-2618118IPR003441NAC domain
PfamPF023655.1E-112191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEDHKYEGIR GTVDDAGRNL PLGFGFHPSD EKIITFYLMP KMLDGNFTAV AIAEVSSMMP  60
AVVGMKKTLV FYIGRSPWGE KTEWIMHEYR LEGSDKLCCP STSSNISKEW VICRVFHRSL  120
RNMDMHMLPY EEAIANTNTD QSSMSFPTSM QFPLEPQDFS IELSALYPHM DMTMPFYSTI  180
DAST
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FLR34e-22NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A1E5V4C42e-30A0A1E5V4C4_9POAL; NAC domain-containing protein 79
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3620734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.12e-24NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]