PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Zjn_sc00171.1.g00170.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 530aa MW: 57242.2 Da PI: 9.1952

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00171.1.g00170.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.2	2.2e-11	188	231	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +E+ RR+r+N+++ Lr+++P+ +K++Ka++ + A+ YI +Lq Zjn_sc00171.1.g00170.1.am.mk 188 VMEKDRRRRLNEKLYALRSVVPNI-----TKMDKASVIRDAIAYIEKLQ 231 68*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.535	181	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-15	181	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.98E-13	184	235	No hit	No description
SMART	SM00353	9.4E-14	187	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-14	187	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.2E-9	188	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MTRTGGQQPT GAAVYGRTTQ GPAPACPVLR LRSLTGGIHP PDVLLAAHAG HQMLSALSAL 60 GVAWLELLRT PTPTSSSYSV PHKARTLSHK NMAINEQTVA SSISAGGCDL RAACLQVRPM 120 ETDVLGVGFD FYWTPPPGLV LDAHDLDLAG FDSNAAAVPT ASSSPPSPQP LLLLGGGGGG 180 HAASKNMVME KDRRRRLNEK LYALRSVVPN ITKMDKASVI RDAIAYIEKL QEEERRVLAE 240 ISALESSTAV RSENDGRDAD DADSLPRRKK PRRVCRCWRH GRRWRCSRSR DAVPKVCGAL 300 EPLRLRIVTA TVAAVGDTVV HTMFVQPPAA PSRASLSAKL VSPLSMVASS CSVMRGPPPG 360 SSALWISSAR WLVSRITAAK VGWPPDSLED LRASSSFRSM TVAATSVPLL LPFFSNHHVR 420 ADLGEVHAAD VRRAEPPQEP DVGERRLLLT PKWEVDEQEV VPVDTVDAER NRSDSEAETL 480 QLVYLAVGGH LAVCGFEWAG CSCLHGQGNA RRDDEQQALK GTRRERRKGR

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MTRTGGQQPT GAAVYGRTTQ GPAPACPVLR LRSLTGGIHP PDVLLAAHAG HQMLSALSAL  60
GVAWLELLRT PTPTSSSYSV PHKARTLSHK NMAINEQTVA SSISAGGCDL RAACLQVRPM  120
ETDVLGVGFD FYWTPPPGLV LDAHDLDLAG FDSNAAAVPT ASSSPPSPQP LLLLGGGGGG  180
HAASKNMVME KDRRRRLNEK LYALRSVVPN ITKMDKASVI RDAIAYIEKL QEEERRVLAE  240
ISALESSTAV RSENDGRDAD DADSLPRRKK PRRVCRCWRH GRRWRCSRSR DAVPKVCGAL  300
EPLRLRIVTA TVAAVGDTVV HTMFVQPPAA PSRASLSAKL VSPLSMVASS CSVMRGPPPG  360
SSALWISSAR WLVSRITAAK VGWPPDSLED LRASSSFRSM TVAATSVPLL LPFFSNHHVR  420
ADLGEVHAAD VRRAEPPQEP DVGERRLLLT PKWEVDEQEV VPVDTVDAER NRSDSEAETL  480
QLVYLAVGGH LAVCGFEWAG CSCLHGQGNA RRDDEQQALK GTRRERRKGR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU955620	3e-35	EU955620.1 Zea mays clone 1539722 DNA binding like mRNA, complete cds.
GenBank	KJ728026	3e-35	KJ728026.1 Zea mays clone pUT6163 bHLH transcription factor (bHLH108) mRNA, partial cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.3	2e-22	bHLH family protein