PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00165.1.g00140.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 218aa MW: 25142.7 Da PI: 10.0287

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00165.1.g00140.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	59.5	1.1e-18	6	52	1	48
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 lppGfrFhPtdeelv++yLk+kv+g ++el ++i+evd+yk+ePw+L Zjn_sc00165.1.g00140.1.am.mk 6 LPPGFRFHPTDEELVNYYLKRKVHGLSIEL-DIIPEVDLYKCEPWELA 52 79**************************.99***********95 PP
2	NAM	64.4	3.4e-20	53	99	81	128
NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWk+tgkd++v +++++g+kktLv+ykgrap+g++t+Wvmheyr+ Zjn_sc00165.1.g00140.1.am.mk 53 GYWKSTGKDRRVSY-QNRAIGMKKTLVYYKGRAPQGVRTNWVMHEYRI 99 9**********9.8999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.158	1	122	IPR003441	NAC domain
SuperFamily	SSF101941	4.58E-47	4	123	IPR003441	NAC domain
Pfam	PF02365	1.6E-21	7	99	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MAPADLPPGF RFHPTDEELV NYYLKRKVHG LSIELDIIPE VDLYKCEPWE LAGYWKSTGK 60 DRRVSYQNRA IGMKKTLVYY KGRAPQGVRT NWVMHEYRIE ESECDNTMGI QDSYALCRVF 120 KKNAAVGEFE KQAPPCTRLG NERRRTGRRL DERMQTTDQT APAPSTAQAV VYRKFLTKWL 180 NRKRGLSSYP RRSTPLSGAG GHLQRQVLQS DLLLPFSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-36	6	126	17	169	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-36	6	126	17	169	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-36	6	126	17	169	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-36	6	126	17	169	NO APICAL MERISTEM PROTEIN
3swm_A	9e-36	6	126	20	172	NAC domain-containing protein 19
3swm_B	9e-36	6	126	20	172	NAC domain-containing protein 19
3swm_C	9e-36	6	126	20	172	NAC domain-containing protein 19
3swm_D	9e-36	6	126	20	172	NAC domain-containing protein 19
3swp_A	9e-36	6	126	20	172	NAC domain-containing protein 19
3swp_B	9e-36	6	126	20	172	NAC domain-containing protein 19
3swp_C	9e-36	6	126	20	172	NAC domain-containing protein 19
3swp_D	9e-36	6	126	20	172	NAC domain-containing protein 19
4dul_A	8e-36	6	126	17	169	NAC domain-containing protein 19
4dul_B	8e-36	6	126	17	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137596	2e-49	AC137596.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 9 clone OSJNBb0031H05, complete sequence.
GenBank	AP005564	2e-49	AP005564.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1228_C03, complete sequence.
GenBank	AP014965	2e-49	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	2e-49	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002460636.1	4e-85	NAC domain-containing protein 45
Swissprot	Q9FFI5	3e-60	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0A9HWW6	6e-84	A0A0A9HWW6_ARUDO; NAC017
STRING	Sb02g032230.1	2e-84	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP67826	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-71	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]