PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00156.1.g00380.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 1101aa    MW: 115952 Da    PI: 8.2788
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00156.1.g00380.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.11.1e-06385440154
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54 
                                   +rr+ +e+Er RR+ +   ++eL  l+P  +    ++   +   ++e+Av Y+  L
  Zjn_sc00156.1.g00380.1.am.mk 385 KRRKTPEIERARRRTMSGLYAELAALIPGvPArVSNDVQTTRTRVVEEAVAYVGAL 440
                                   79999************************765667777799999999999997655 PP
2HLH20.11.1e-06529584154
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54 
                                   +rr+ +e+Er RR+ +   ++eL  l+P  +    ++   +   ++e+Av Y+  L
  Zjn_sc00156.1.g00380.1.am.mk 529 KRRKTPEIERARRRTMSGLYAELAALIPGvPArVSNDVQTTRTRVVEEAVAYVGAL 584
                                   79999************************765667777799999999999997655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd046604.20E-202798No hitNo description
SuperFamilySSF476998.72E-63598IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
CDDcd000833.09E-5382437No hitNo description
SuperFamilySSF474594.32E-7383458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.592384440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-7385442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-4390446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-5526581No hitNo description
PROSITE profilePS5088811.592528584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-6529585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-7529586IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0014534590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.5E-5617679No hitNo description
Gene3DG3DSA:3.30.70.2608.2E-4626677No hitNo description
CDDcd021160.00124626677No hitNo description
Gene3DG3DSA:2.160.20.101.1E-1227241100IPR012334Pectin lyase fold
SuperFamilySSF511269.73E-1137241100IPR011050Pectin lyase fold/virulence factor
PfamPF002959.1E-947621087IPR000743Glycoside hydrolase, family 28
SMARTSM007102200819841IPR006626Parallel beta-helix repeat
SMARTSM007103.6880906IPR006626Parallel beta-helix repeat
SMARTSM00710420907928IPR006626Parallel beta-helix repeat
SMARTSM007106000930950IPR006626Parallel beta-helix repeat
SMARTSM007104960981IPR006626Parallel beta-helix repeat
SMARTSM0071023009911012IPR006626Parallel beta-helix repeat
SMARTSM00710300010271067IPR006626Parallel beta-helix repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004650Molecular Functionpolygalacturonase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1101 aa     Download sequence    Send to blast
MVKLLGLLLL VVAIVGSAVG AAAEENCDED RKGMIAECQK YATFPAEPKI PPSDACCAVW  60
KKANVPCLCS RVTKEVEKRW CMEKVVYFAK YCGKPMQPGY QCGKKEKQTA RTCVPYPNLY  120
ALLILSWCQN SIKVIQMLLR YSKKRKSTHD YMAALKMRRL PWVNLVVAWI WGAQARGLLG  180
VVHSFFPILG SQAQRSKTKL VHATTSVVEV EEKQPHPASG VWRMARSWGG GVAKTWEAGA  240
RCCLRTGLSV AVLSRKVGSP ALAYDEAIAA DATAVQGWGG EAAPIRNDGV GAAESWPLTL  300
PDDAEARVVA NPRVGRGMER MVEAEDEMEE GEGGEQSSET MEGNHLTSHR RTLIDRTMVG  360
GEAPVTPSLA AEGKRSPATA APSSKRRKTP EIERARRRTM SGLYAELAAL IPGVPARVSN  420
DVQTTRTRVV EEAVAYVGAL RAAAAELEAQ RAVAAGRXXS VCPPHAAAEP EEACSDLTSK  480
PGPYRAGNHL TSHRRTLIDR TMVGGEAPVT PSLAAEGKRS PATAAPSSKR RKTPEIERAR  540
RRTMSGLYAE LAALIPGVPA RVSNDVQTTR TRVVEEAVAY VGALRAAAAG RSRVAARTDG  600
GGGAGPVVES SVDASCFAVR LPAARRPGSL SRVIEVLHRH GVAVLAAAVT SDGGEAAVTV  660
TTSAVAPSAV ERIKADISSC IPGDEGLPAC ATEMASARDA IRALFVLAAV CAASATKRPG  720
PSKADAPAAA PAGTFDITKL GAADDGKTDS TKAVMEAWTS ACAATGSATL LIPAGDYLVG  780
PLGFTGPCKG DVTIQVDGTL LGTNDLTKYK ASWIEVTRVD NIVITGSGTL DGQGKAVYIK  840
DSTELKAMPN TLVLYYVTNG TVSGIKLFNS KFFHINIDKS KDITVKDVTI TAPGDVENTD  900
GVHVVDSSNV TITNSSIGTG DDCVSVGPGC AGVTVSGVTC GPGQGISVGC LGRYKDEKDV  960
SNVTVCDCVL KGTTNGVRIK SYEDAESVIT ASHMTFENIR MEDVANPIII DQYYCPEKVC  1020
PGKQNSTSHV VVKDVVFRNI TGTSSTPEAV SLLCSESQPC SGVELIDVKV EYAGKNNKTM  1080
AVCSNAKGIA KGSISALACL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bhe_A1e-198241014113314POLYGALACTURONASE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1529541RRKTPEIERARRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40723