PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 109aa MW: 12421.5 Da PI: 10.0311

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00150.1.g00210.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78.8	3.9e-25	10	56	2	48
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr+g+lKKA ELSvLCda + +iifs +gkly+ Zjn_sc00150.1.g00210.1.am.mk 10 RIENPVHRQVTFCKRRAGLLKKARELSVLCDAHIGIIIFSAHGKLYD 56 8********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.6E-35	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.52	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.11E-28	1	75	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.77E-40	2	79	No hit	No description
PRINTS	PR00404	8.8E-27	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.3E-24	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.8E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.8E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0048364	Biological Process	root development
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MARGKIQLRR IENPVHRQVT FCKRRAGLLK KARELSVLCD AHIGIIIFSA HGKLYDLATT 60 GTMEELIERY KTASREAQQG DGCGDQRMDP KQETMVLQQE INLLQKGLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-17	1	70	1	69	MEF2C
5f28_B	2e-17	1	70	1	69	MEF2C
5f28_C	2e-17	1	70	1	69	MEF2C
5f28_D	2e-17	1	70	1	69	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972486.1	9e-69	MADS-box transcription factor 26
Swissprot	A2YQK9	4e-65	MAD26_ORYSI; MADS-box transcription factor 26
Swissprot	Q0J8G8	4e-65	MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBL	A0A0A9TEC7	2e-68	A0A0A9TEC7_ARUDO; Uncharacterized protein
STRING	Si014419m	3e-68	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1491	36	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	1e-44	AGAMOUS-like 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Lee S, et al. Further characterization of a rice AGL12 group MADS-box gene, OsMADS26. Plant Physiol., 2008. 147(1): p. 156-68 [PMID:18354041] Khong GN, et al. OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice. Plant Physiol., 2015. 169(4): p. 2935-49 [PMID:26424158]