PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00150.1.g00040.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 410aa    MW: 43824.7 Da    PI: 6.7617
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00150.1.g00040.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.8e-52111391128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 
                                   +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++  k+ +  +++wyfFs++dkky+tg+r+nrat
  Zjn_sc00150.1.g00040.1.sm.mk  11 VPPGFRFHPTEEELLDYYLRKKVASQEIDL-DVIRDVDLNKLEPWDIQEkcKIGSgPQNDWYFFSHKDKKYPTGTRTNRAT 90 
                                   69****************************.9***************952444443456********************** PP

                           NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   ++g+Wkatg+dk++++   + +g++ktLvfykgrap+g+k+dW+mheyrl
  Zjn_sc00150.1.g00040.1.sm.mk  91 AAGFWKATGRDKAIYN-AVKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
                                   ****************.8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-557149IPR003441NAC domain
PROSITE profilePS5100553.91311213IPR003441NAC domain
PfamPF023655.4E-2812139IPR003441NAC domain
SuperFamilySSF1019419.68E-55201213IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSISVNGQSC VPPGFRFHPT EEELLDYYLR KKVASQEIDL DVIRDVDLNK LEPWDIQEKC  60
KIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYNAVKR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD DPADADATAA TVELLQPSFI PSIGCNSVLT PAFASLVGDA  180
VIHGQDRQVT AAVAASSDAG QEDGWVVCRV FKKKHHHKES GSDGRGKHGH DHGGGNNGSK  240
AATHGHELQY SSSNDALDQI LSPPGGPGRP GSRYLQPVET VPGGQGFMKL PPLESPSAAT  300
TALTPPPHMP GKAVASSGGD DLLHRGGNRI TDWAMMDRLV ASHLNGQPDA PADHQLGSFD  360
GGDDVGSADV LAFYSAAATR LFSGGGGGSG ASGSDDDLWS FARSAERLIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-44814914152NO APICAL MERISTEM PROTEIN
1ut4_B8e-44814914152NO APICAL MERISTEM PROTEIN
1ut7_A8e-44814914152NO APICAL MERISTEM PROTEIN
1ut7_B8e-44814914152NO APICAL MERISTEM PROTEIN
3swm_A1e-43814317149NAC domain-containing protein 19
3swm_B1e-43814317149NAC domain-containing protein 19
3swm_C1e-43814317149NAC domain-containing protein 19
3swm_D1e-43814317149NAC domain-containing protein 19
3swp_A1e-43814317149NAC domain-containing protein 19
3swp_B1e-43814317149NAC domain-containing protein 19
3swp_C1e-43814317149NAC domain-containing protein 19
3swp_D1e-43814317149NAC domain-containing protein 19
4dul_A8e-44814914152NAC domain-containing protein 19
4dul_B8e-44814914152NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750810.0KT075081.1 Panicum virgatum secondary wall NAC master switch (SWN2A) mRNA, complete cds.
GenBankKT0750820.0KT075082.1 Panicum virgatum secondary wall NAC master switch (SWN2B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140582.11e-160uncharacterized protein LOC100272652
SwissprotQ84WP61e-107NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A3B6RGI31e-161A0A3B6RGI3_WHEAT; Uncharacterized protein
TrEMBLA0A446XJ681e-161A0A446XJ68_TRITD; Uncharacterized protein
STRINGMLOC_66924.21e-160(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.14e-93NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]