PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00148.1.g00240.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 365aa MW: 38826.7 Da PI: 6.7353

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00148.1.g00240.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.9	7.4e-18	176	222	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq Zjn_sc00148.1.g00240.1.am.mk 176 VHNLSERRRRDRINEKMRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 222 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.04E-18	167	226	No hit	No description
SuperFamily	SSF47459	2.75E-21	170	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.73	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-15	176	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-21	176	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-19	178	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MGIKYLGAAG CKKWILAMDG GTGSTPPSQK RPLPPDGELV ELLWQDGAVV AHSQAQGHQN 60 HRAHGPSGGN TGPSGVTGDL ACLPDAGALG GDDIEVRSSF CGSNLVAATP TPRVGHDDAA 120 LPLPPGASTS GSSALLKRSR DEVDSPGGED AEFEAVDETR TSRRPASKRR TRAAEVHNLS 180 ERRRRDRINE KMRALQELVP HCNKTDKASI LDEAIEYLKS LQLQVQIMWM TAGMAPMMLP 240 DGHQQLTAMG LNSSCMPHAT QVLTQMQRVP PFMNIPLRNQ MPRVSSAATN VPNVANQDQK 300 NNIAGPRNRF LHPNGAPAAT PEVPSLFGYG SQMAHQNEIQ ELLATIAAPA LEAEPPCSSD 360 GTGTT

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MGIKYLGAAG CKKWILAMDG GTGSTPPSQK RPLPPDGELV ELLWQDGAVV AHSQAQGHQN  60
HRAHGPSGGN TGPSGVTGDL ACLPDAGALG GDDIEVRSSF CGSNLVAATP TPRVGHDDAA  120
LPLPPGASTS GSSALLKRSR DEVDSPGGED AEFEAVDETR TSRRPASKRR TRAAEVHNLS  180
ERRRRDRINE KMRALQELVP HCNKTDKASI LDEAIEYLKS LQLQVQIMWM TAGMAPMMLP  240
DGHQQLTAMG LNSSCMPHAT QVLTQMQRVP PFMNIPLRNQ MPRVSSAATN VPNVANQDQK  300
NNIAGPRNRF LHPNGAPAAT PEVPSLFGYG SQMAHQNEIQ ELLATIAAPA LEAEPPCSSD  360
GTGTT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	184	KRRTRAAEVHNLSERRRR
2	180	185	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955437.1	1e-142	transcription factor PIF4
Swissprot	Q10CH5	8e-81	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	K3ZTU8	1e-152	K3ZTU8_SETIT; Uncharacterized protein
STRING	Pavir.Ba03888.1.p	1e-154	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	7e-33	phytochrome interacting factor 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]