PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00142.1.g00050.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 277aa MW: 28809.7 Da PI: 10.9666 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95 | 5.2e-30 | 207 | 265 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs+fpr+YYrC+ gCp++k+ver+a+dp ++++tYeg+H+h+ Zjn_sc00142.1.g00050.1.sm.mk 207 SDEHSWRKYGQKPIKGSPFPRGYYRCSAVkGCPARKHVERDASDPATLVVTYEGDHRHD 265 69*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.2E-5 | 169 | 200 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.9E-31 | 193 | 266 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.515 | 201 | 267 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-25 | 202 | 265 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-35 | 206 | 266 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-25 | 208 | 264 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MAVDLMGERL AFREAAAAGL RSLELLASSL SPRTAAPVGE IAGQAVARFR RAINLLDRTG 60 HARFRRAPVG VAPAETDSPP ASPSRPRAPV LPAPKSQNDL VALDFEKPAP AAATSTSFLS 120 SVTAAGGGEG SVSKGQSLLA GVSSGKPPLP KRKHPCPGTV APSPAAEATT AARPATCHCS 180 GKRRRKHLTT RTVRVPASSR ASTDVPSDEH SWRKYGQKPI KGSPFPRGYY RCSAVKGCPA 240 RKHVERDASD PATLVVTYEG DHRHDSAAAA AAPQAVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-20 | 201 | 265 | 12 | 75 | Probable WRKY transcription factor 4 |
2lex_A | 3e-20 | 201 | 265 | 12 | 75 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972520.1 | 2e-86 | probable WRKY transcription factor 17 | ||||
Swissprot | Q9SV15 | 1e-66 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A1E5VBK6 | 5e-92 | A0A1E5VBK6_9POAL; Putative WRKY transcription factor 11 | ||||
STRING | Si014163m | 9e-86 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 2e-54 | WRKY DNA-binding protein 11 |