PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00141.1.g00870.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 169aa    MW: 18666.2 Da    PI: 11.4763
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00141.1.g00870.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.84.9e-2447130179
                                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                   f+kv tpsdv+k++rlv+pk+fae+h    g   + ++ l + d +g   W+++++y+++s++yv+tkGW+++v++++L +
  Zjn_sc00141.1.g00870.1.sm.mk  47 FEKVVTPSDVGKLNRLVVPKHFAERHlpllGAAARAGTVLCFHDARGhAAWRFRYSYWGSSQSYVMTKGWSRYVRDKRLAA 127
                                   99****************************878889999*****999799******************************* PP

                                   T-E CS
                            B3  77 gDf 79 
                                   gD+
  Zjn_sc00141.1.g00870.1.sm.mk 128 GDT 130
                                   **7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-3043130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-2445130IPR015300DNA-binding pseudobarrel domain
CDDcd100173.72E-2345130No hitNo description
SMARTSM010192.8E-1247144IPR003340B3 DNA binding domain
PfamPF023625.6E-2147130IPR003340B3 DNA binding domain
PROSITE profilePS5086310.51847156IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MALTLAQESW KSSELGGGAG GLAAEGANSN QQLLQSHTGG GVRERLFEKV VTPSDVGKLN  60
RLVVPKHFAE RHLPLLGAAA RAGTVLCFHD ARGHAAWRFR YSYWGSSQSY VMTKGWSRYV  120
RDKRLAAGDT RKERSSRAGG KGRWKTGRPM MIRDGERGRL ARTVELHFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-3643130490B3 domain-containing transcription factor NGA1
5os9_B3e-3643130490B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269653e-63KJ726965.1 Zea mays clone pUT3665 ABI3VP1 transcription factor (ABI37) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304886.14e-42B3 domain-containing protein Os06g0107800-like
SwissprotQ5VS552e-35Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
SwissprotQ7EZD53e-35Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLA0A3L6RX051e-44A0A3L6RX05_PANMI; Uncharacterized protein
STRINGPavir.Db02478.1.p9e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-36B3 family protein