PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00138.1.g00340.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 644aa    MW: 68761.6 Da    PI: 9.6223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00138.1.g00340.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-13247297255
                                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +++h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Zjn_sc00138.1.g00340.1.am.mk 247 KMSHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 297
                                   789*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.91E-14243301No hitNo description
PROSITE profilePS5088815.555245296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-17245318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-11247297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-13247308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-12251302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAAFTAGAAL LGIDASRRPA CRPPSALNAS CTVTLLQPAA AGRRQGRAAA RVARRPIQTA  60
SQAGARARGL RPQSLYRYYA QGLSTSLSAV EHAGKVFKTS VRALGSYLEP AHFSVHCTLF  120
HFILPRPSSM GDGGLCELLV DGRCDQLRHV SDAEDLFSIL ETWEECMKGG LGGPRGSAAV  180
FNSQVDCTGG GSSVADAGAA RPTSTTMGNS RRRSVVDEAK GGSAPVQKKQ KGTVAEPAPD  240
DDDGAAKMSH IAVERNRRKQ MNEHLAVLRS LMPCFYVKRG DQASIIGGVV DYIKELQQVL  300
RSLEAKKHRK ACADQVLSPR PGTAAASPRA LLDMSSMPQI SRRVAVPISP RTPTRPGSPY  360
YVPGCGGRPP HPAAAYMMAT STQATTPTGS SSSCSSSHDQ QQQNYSPYLP TLDSIVTELA  420
VHASAASRPI LPDVKVEFAG PNLVLKTVSR RAPGQALKII AALESLSLEI LHVSVSTVED  480
TMVHSFTIKI GVECELSAEE LVQEIQRTIH ACMARANVLC AAQAATPITA SPRRRQAPTH  540
AALPNRRPLS RRLHLWCPYP EELSRPLPRP PPPSPDSCPV AAKCSPLPRC LRLYCPHPEE  600
DQPCRGHPPP PPTAGSSMLP SPTPDRRGPA PSSLLSQAAL WRHL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0615851e-80BT061585.1 Zea mays full-length cDNA clone ZM_BFb0161H07 mRNA, complete cds.
GenBankKJ7268671e-80KJ726867.1 Zea mays clone pUT3408 bHLH transcription factor (bHLH139) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799200.11e-149transcription factor SPEECHLESS-like
TrEMBLA0A3L6QHE71e-150A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like
STRINGPavir.Aa02723.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.18e-66bHLH family protein