PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zjn_sc00138.1.g00250.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 327aa MW: 35834.5 Da PI: 7.6683

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00138.1.g00250.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	185	210	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Zjn_sc00138.1.g00250.1.am.mkhc 185 YQPDICKDYKETGYCGYGDSCKFMHD 210 67789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.96E-9	183	215	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-7	184	211	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	184	212	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-12	185	215	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.5E-10	185	210	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.30.40.10	8.2E-14	249	308	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF13920	3.9E-8	262	303	No hit	No description
SuperFamily	SSF57850	2.99E-13	262	305	No hit	No description
CDD	cd00162	1.10E-7	263	304	No hit	No description
SMART	SM00184	2.0E-4	263	300	IPR001841	Zinc finger, RING-type
PROSITE profile	PS50089	10.571	263	301	IPR001841	Zinc finger, RING-type
PROSITE pattern	PS00518	0	278	287	IPR017907	Zinc finger, RING-type, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MADGGGEPGT GGGSAPVCNF VRKPPKNIRK RPAAPADSDD ENGGGGGAIA SLRSKKGPSA 60 PGKLVFSSTD GSGEPRRFQY ESSRTIQSST DSRATATLET ETEFDRDARA IRERQLKQAE 120 ETLKKNPSTA SSASGSGEVY KGIHGYTDYK AGFRREHTVS SEKAGGSHGP LRASAHIRVS 180 ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQL EKEYEEAEKA RKRRIAMGGG 240 DGSDDEAAED DDDDDEEALP FACYICRQPF VDPVVTKCKH YFCEHCALKH HSKNKKCFVC 300 NKPTLGIFNA AQEIRRKMAQ DKKQQEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	1e-62	80	327	100	326	RING finger protein 113A
5z58_M	1e-62	80	327	100	326	RING finger protein 113A
6ff4_t	1e-62	80	327	100	326	RING finger protein 113A
6ff7_t	1e-62	80	327	100	326	RING finger protein 113A
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156391.1	0.0	zinc finger CCCH domain-containing protein 15
Swissprot	Q6K4V3	1e-174	C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBL	A0A3B6JMH3	0.0	A0A3B6JMH3_WHEAT; Uncharacterized protein
TrEMBL	A0A453IHI9	0.0	A0A453IHI9_AEGTS; Uncharacterized protein
TrEMBL	R7W9H9	0.0	R7W9H9_AEGTA; Zinc finger CCCH domain-containing protein 15
STRING	EMT14529	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8071	36	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-129	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]