PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00134.1.g00450.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 385aa MW: 43131.1 Da PI: 6.674

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00134.1.g00450.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	72.7	5.9e-23	103	185	3	85
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyve 81 ++d lP + + +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al++lGf +y++ Zjn_sc00134.1.g00450.1.am.mkhc 103 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLIVECCVEFINLLSSESNEVCSREEKKTIAPEHVLKALSDLGFREYID 181 67999************************************************************************** PP NF-YB 82 plkv 85 ++ + Zjn_sc00134.1.g00450.1.am.mkhc 182 EVYA 185 9854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	25	No hit	No description
Gene3D	G3DSA:1.10.20.10	4.7E-37	97	233	IPR009072	Histone-fold
SuperFamily	SSF47113	6.92E-34	104	232	IPR009072	Histone-fold
Pfam	PF00808	6.0E-20	107	171	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MDGRWMTQVA MDSRQANLLG ATAACPSPPI PLAPSPRLPL ESPFPSSPLR RPPNPNFPIP 60 RCTIRIHSQF ARGGVPLPVA PAYFCGFGAP HKMDQMDIVG KSKEDVSLPK STMFKIIKEM 120 LPPDVRVARD AQDLIVECCV EFINLLSSES NEVCSREEKK TIAPEHVLKA LSDLGFREYI 180 DEVYAAYEQH KLDTLDSPKA SQFTGIGMTE EEAAAEQQRM FAEARARMNN GATKPKEPEQ 240 EPQQQAQQLP QIQPQIQAPP QHPMQLHPPP QQSVKPQLPL HQPPQHSVQP QLQLHAQLQQ 300 PLQQQQHSLL EQPSQPQPQL HMQPQQSPQM LRHPLPGQPS QSQTQLHLQQ QQPPEVQPQK 360 PPQVQLQHQP QAQLPQVQTG HDVDS

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MDGRWMTQVA MDSRQANLLG ATAACPSPPI PLAPSPRLPL ESPFPSSPLR RPPNPNFPIP  60
RCTIRIHSQF ARGGVPLPVA PAYFCGFGAP HKMDQMDIVG KSKEDVSLPK STMFKIIKEM  120
LPPDVRVARD AQDLIVECCV EFINLLSSES NEVCSREEKK TIAPEHVLKA LSDLGFREYI  180
DEVYAAYEQH KLDTLDSPKA SQFTGIGMTE EEAAAEQQRM FAEARARMNN GATKPKEPEQ  240
EPQQQAQQLP QIQPQIQAPP QHPMQLHPPP QQSVKPQLPL HQPPQHSVQP QLQLHAQLQQ  300
PLQQQQHSLL EQPSQPQPQL HMQPQQSPQM LRHPLPGQPS QSQTQLHLQQ QQPPEVQPQK  360
PPQVQLQHQP QAQLPQVQTG HDVDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	3e-33	104	225	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035946	1e-171	BT035946.1 Zea mays full-length cDNA clone ZM_BFb0089E11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973302.1	1e-101	protein Dr1 homolog
TrEMBL	K3YIU0	1e-100	K3YIU0_SETIT; Uncharacterized protein
STRING	Si014159m	1e-101	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5720	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	1e-75	nuclear factor Y, subunit B13