PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00134.1.g00450.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YB | ||||||||
Protein Properties | Length: 385aa MW: 43131.1 Da PI: 6.674 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 72.7 | 5.9e-23 | 103 | 185 | 3 | 85 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyve 81 ++d lP + + +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al++lGf +y++ Zjn_sc00134.1.g00450.1.am.mkhc 103 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLIVECCVEFINLLSSESNEVCSREEKKTIAPEHVLKALSDLGFREYID 181 67999************************************************************************** PP NF-YB 82 plkv 85 ++ + Zjn_sc00134.1.g00450.1.am.mkhc 182 EVYA 185 9854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 25 | No hit | No description |
Gene3D | G3DSA:1.10.20.10 | 4.7E-37 | 97 | 233 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.92E-34 | 104 | 232 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.0E-20 | 107 | 171 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MDGRWMTQVA MDSRQANLLG ATAACPSPPI PLAPSPRLPL ESPFPSSPLR RPPNPNFPIP 60 RCTIRIHSQF ARGGVPLPVA PAYFCGFGAP HKMDQMDIVG KSKEDVSLPK STMFKIIKEM 120 LPPDVRVARD AQDLIVECCV EFINLLSSES NEVCSREEKK TIAPEHVLKA LSDLGFREYI 180 DEVYAAYEQH KLDTLDSPKA SQFTGIGMTE EEAAAEQQRM FAEARARMNN GATKPKEPEQ 240 EPQQQAQQLP QIQPQIQAPP QHPMQLHPPP QQSVKPQLPL HQPPQHSVQP QLQLHAQLQQ 300 PLQQQQHSLL EQPSQPQPQL HMQPQQSPQM LRHPLPGQPS QSQTQLHLQQ QQPPEVQPQK 360 PPQVQLQHQP QAQLPQVQTG HDVDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 3e-33 | 104 | 225 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035946 | 1e-171 | BT035946.1 Zea mays full-length cDNA clone ZM_BFb0089E11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973302.1 | 1e-101 | protein Dr1 homolog | ||||
TrEMBL | K3YIU0 | 1e-100 | K3YIU0_SETIT; Uncharacterized protein | ||||
STRING | Si014159m | 1e-101 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5720 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 1e-75 | nuclear factor Y, subunit B13 |