PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zjn_sc00129.1.g00690.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 291aa MW: 31157.9 Da PI: 8.2081

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00129.1.g00690.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.9	2e-09	91	112	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ Gd+C +aHg Zjn_sc00129.1.g00690.1.sm.mk 91 PCPEFRKGGACRKGDNCEYAHG 112 8********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.31E-5	85	116	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.2E-6	86	113	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.441	86	114	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.5E-5	91	114	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.8E-7	91	112	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MSMCSGPRKP SNQPPPEAAT ATANDATASL LLELAAADDL AAFKRAVEDA GASALDAACQ 60 WYGPSASATA GGRPRNARRR DPRRYSYSCV PCPEFRKGGA CRKGDNCEYA HGVFECWLHP 120 AQYRTRLCKD ELRALSLKQA GDMPAYSAVP DTQLHIPTSP MVAANTAFGM DHSMAKAIMS 180 SRASAFAKRS QSFIDRSGRA PAARSLMSPA PTNSPSMLSD WGSPDGKLDW GVQGDELNKF 240 RKSASFAFRG QSAAPVASPA EPDVSWVNSL VRDGHAGDIF AQWPEQEQMV A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015692465.1	5e-94	PREDICTED: zinc finger CCCH domain-containing protein 33-like
Refseq	XP_025807185.1	9e-92	zinc finger CCCH domain-containing protein 33-like
Swissprot	Q688R3	7e-86	C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBL	A0A287EPU9	1e-106	A0A287EPU9_HORVV; Uncharacterized protein
STRING	Pavir.J10016.1.p	3e-92	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6013	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-24	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]