PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00129.1.g00230.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 202aa MW: 22050.7 Da PI: 10.533

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00129.1.g00230.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	24.4	3.7e-08	15	54	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+ k+++ tf +Rr+ ++ A+ LS LC + vav++ ++ Zjn_sc00129.1.g00230.1.am.mk 15 ISRKTRQASTFQRRRADLFMEASSLSNLCHVPVAVMVHAP 54 899********************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	10.834	4	51	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-8	6	77	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.9E-8	15	54	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MAHVARGQVK LGRVISRKTR QASTFQRRRA DLFMEASSLS NLCHVPVAVM VHAPGEATEP 60 AIWPPAESAS ILLQRSKIFL LRQRTEKLRR LLRVVKLANR AHEVSLVLAD LLAGHHQVLD 120 GVPVDLAVDV RAVLRLRLKV VSGAIESRSA TVDVADDGEI RRGSGLLEKT AAVMAEESGG 180 AQPTDAELEP FLGELLLLKW PV

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24440	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-09	M-type_MADS family protein