PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00122.1.g00890.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 549aa    MW: 60311.2 Da    PI: 10.1347
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00122.1.g00890.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.8e-19338392256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   r++ +f++eq++ Le++F+ + ++  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Zjn_sc00122.1.g00890.1.am.mk 338 RNKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 392
                                   67789*************************************************9 PP
2HD-ZIP_I/II119.91.3e-38339430293
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                   +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal  + e+L+k
  Zjn_sc00122.1.g00890.1.am.mk 339 NKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKK 419
                                   79******************************************************************************* PP

                   HD-ZIP_I/II  83 eveeLreelke 93 
                                   e+++L ++l++
  Zjn_sc00122.1.g00890.1.am.mk 420 EKHALLKQLEK 430
                                   ******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-19328394IPR009057Homeodomain-like
SuperFamilySSF466891.97E-18332396IPR009057Homeodomain-like
PROSITE profilePS5007117.589334394IPR001356Homeobox domain
SMARTSM003891.8E-16337398IPR001356Homeobox domain
PfamPF000461.9E-16338392IPR001356Homeobox domain
CDDcd000865.15E-17338395No hitNo description
PRINTSPR000313.1E-5365374IPR000047Helix-turn-helix motif
PROSITE patternPS000270369392IPR017970Homeobox, conserved site
PRINTSPR000313.1E-5374390IPR000047Helix-turn-helix motif
PfamPF021832.1E-12394436IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MGRGGALCHA ARLGPDGGGD VLSVLTVTRF LGNPHVGKEC IQPKYPVPDK VVLQLKKSTT  60
MSLPVAAGTT PASPSPVVQL ESQARLVAAA CLGALAPRPH PLIVLMSLAA ELDTEKTVER  120
SELAWHGDSP PLTARHVGAH ATQRHANASN LIEHVRPPRR PHQPPEQRRA RAAARRRNKH  180
GLGGRTAPRA SASPRPSAGS NSPARPRDSD AGHSAARQLQ GPPVRGEEER REGQGRVRTP  240
RRLISHTVAI TPIKQLDRPA RQHLARVPIA IRHLPFLLLL FFTSSFTAEG ERERERERER  300
ERERALAMEG DEDVPEWMMD ASGASGGKRK GGGGAVDRNK KRFSEEQIKS LESMFATQTK  360
LEPRQKLQLA RELGLQPRQV AIWFQNKRAR WKSKQLEREY SALRDDYDAL LCSYESLKKE  420
KHALLKQLEK LAEMLQEPGP KYGSNAVDAL TGDDDSLKVV TGMKEEFSDV RPAAPYSSVE  480
EAGGAGKFTP FADDAAGNLF RPPPQPPVGF TASGPPEHQP FQFQSSFWPS SAEQTCGSSQ  540
WWELESLSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293303RERERERERER
2325333GGKRKGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-41homeobox 7