PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00120.1.g00380.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 348aa MW: 38003.1 Da PI: 10.4819 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 9.7e-21 | 196 | 245 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +grW+AeIrdp + +r++lg+f+taeeAa+a++aa ++l+g Zjn_sc00120.1.g00380.1.am.mk 196 RYTGVRRRP-WGRWAAEIRDP-----QlrRRVWLGTFDTAEEAAAAYDAACRRLRG 245 69*******.**********9.....445*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.589 | 196 | 253 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.8E-29 | 196 | 259 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-27 | 196 | 252 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-19 | 196 | 253 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.65E-15 | 196 | 251 | No hit | No description |
Pfam | PF00847 | 4.7E-14 | 196 | 245 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 197 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 219 | 235 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MPDKGTRVIS FRALSTPHVP WLPRANMPHT ATAPPRGRPR PIGGDSLQGT PTNNYGTTLP 60 LAPLFNLSFL CFLPTTDTVP RPQFPLRLPA RLPNSPRVCL ETRKAAAGEA AVGIEEDKLA 120 VEVEEPAAPR CRLVRIIVHD EDATDSSSDE DDDEGQEERK RRVQPPAGVK RKRVMLRAAG 180 GEGEERKKAA AEEEVRYTGV RRRPWGRWAA EIRDPQLRRR VWLGTFDTAE EAAAAYDAAC 240 RRLRGSGAAT NLSSGDTTPA HRPPAALLPP RPPLPPIRRP PQQEKKPPPP SQDSSPETEK 300 QTAASSSPEP FVPLPVWALL SGKRKKRSGC GGRVPALRTP PAEEASRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 188 | 252 | 6 | 71 | Ethylene-responsive transcription factor ERF096 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 172 | RKRRVQPPAGVKRKR |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP27695 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03800.1 | 6e-16 | ERF domain protein 10 |