PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00113.1.g00150.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 506aa    MW: 54046.6 Da    PI: 8.2163
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00113.1.g00150.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-31232288259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  Zjn_sc00113.1.g00150.1.sm.mkhc 232 DDGYNWRKYGQKVVKGSDCPRSYYKCTYPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 288
                                     8**************************************99.***************8 PP
2WRKY106.11.8e-33388446159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+H he
  Zjn_sc00113.1.g00150.1.sm.mkhc 388 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHSHE 446
                                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-28226290IPR003657WRKY domain
SuperFamilySSF1182902.62E-25229290IPR003657WRKY domain
SMARTSM007745.0E-34231289IPR003657WRKY domain
PROSITE profilePS5081123.078232290IPR003657WRKY domain
PfamPF031062.2E-24232288IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-36374448IPR003657WRKY domain
SuperFamilySSF1182907.72E-29380448IPR003657WRKY domain
PROSITE profilePS5081136.839383448IPR003657WRKY domain
SMARTSM007745.3E-39388447IPR003657WRKY domain
PfamPF031061.1E-25389445IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MSARPPPPPR PRLALPPRSN SESLFTGAGD ASPGPLTLAS ALFSSDTGGG TSSSTGTGAT  60
SFTELLIGSL APPPPSLAPQ QQHEAERGRG GVARAGPALS VAPPASSASA ASVFTVPPGL  120
SPSGLFDSPG LLFSPAMGGF GMSHQQALAQ VTAQASHSPH RMFDYMKQQS FSAAATSSEA  180
HQHMNSAANV AGTSEMRMVT ENNENASFQS AEASQRYQVN APVNAVVDKP ADDGYNWRKY  240
GQKVVKGSDC PRSYYKCTYP NCPVKKKVEH AEDGQISEII YKGKHNHQRP PNKRGKDGNP  300
SAAEQIEQSN DATSGLSGAK RDPEAMYGMS EQLSGLSEGD DMEDGESRPQ EVDDGDNENK  360
RRTIQISSQR TLSEPKIIVQ TTSEVDLLDD GYRWRKYGQK VVKGNPHPRS YYKCTFAGCN  420
VRKHIERASS DPKAVITTYE GKHSHEPPVG RGSNQNAGMS QQKGQNNQAS LSRTDFSNAN  480
QMQMGTSLSR LARMSLSDFA ASAQNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-38232448877Probable WRKY transcription factor 4
2lex_A3e-38232448877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147897.20.0uncharacterized protein LOC100281507
TrEMBLB6SYC50.0B6SYC5_MAIZE; SPF1-like DNA-binding protein
STRINGGRMZM2G076657_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-111WRKY DNA-binding protein 3