PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00112.1.g00480.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 265aa    MW: 29083.9 Da    PI: 7.7485
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00112.1.g00480.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.45.4e-32112168360
                                   -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                   Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  d+++ ei+Y+geHnh+k
  Zjn_sc00112.1.g00480.1.sm.mk 112 DGYSWRKYGQKKVKGSEFPRSYYKCTHPNCPVKRKVETTL-DGQIAEIVYSGEHNHPK 168
                                   9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182909.55E-25109169IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-27109169IPR003657WRKY domain
SMARTSM007741.0E-34110168IPR003657WRKY domain
PROSITE profilePS5081122.905112169IPR003657WRKY domain
PfamPF031065.3E-25112167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQGHEKITAL KPLASRPLST FRSFSRGLQD FIATDSQSIT DLEETLIRPK ATRLKPLPSD  60
LPTEISATID AGSGMLEEME VDAEQPVPCN HLAKYQAVRK PLGGLKNCVS YDGYSWRKYG  120
QKKVKGSEFP RSYYKCTHPN CPVKRKVETT LDGQIAEIVY SGEHNHPKPH SLMKPLSSTK  180
TEVAVTNVCD NNSVEAESLI LDRNKAPGTA VTACGGSSDC VDKFEKLSED ADSNKSSDGR  240
DGFKKQPDSL SKQCPIVSTN LHQLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-161121691674WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2428555e-60AK242855.1 Oryza sativa Japonica Group cDNA, clone: J090073J20, full insert sequence.
GenBankAP0149675e-60AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAP0149685e-60AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAY3418605e-60AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds.
GenBankBX0004965e-60BX000496.1 Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0005035e-60BX000503.2 Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0725485e-60BX072548.4 Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126205e-60CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819931.16e-81probable WRKY transcription factor 3
RefseqXP_025819932.16e-81probable WRKY transcription factor 3
TrEMBLA0A0A9G2V54e-96A0A0A9G2V5_ARUDO; WRKY3
STRINGSi014939m3e-77(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-32WRKY family protein