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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zjn_sc00112.1.g00480.1.sm.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
WRKY |
| Protein Properties |
Length: 265aa MW: 29083.9 Da PI: 7.7485 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00112.1.g00480.1.sm.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 101.4 | 5.4e-32 | 112 | 168 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++ d+++ ei+Y+geHnh+k
Zjn_sc00112.1.g00480.1.sm.mk 112 DGYSWRKYGQKKVKGSEFPRSYYKCTHPNCPVKRKVETTL-DGQIAEIVYSGEHNHPK 168
9***************************************.***************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MQGHEKITAL KPLASRPLST FRSFSRGLQD FIATDSQSIT DLEETLIRPK ATRLKPLPSD 60
LPTEISATID AGSGMLEEME VDAEQPVPCN HLAKYQAVRK PLGGLKNCVS YDGYSWRKYG 120
QKKVKGSEFP RSYYKCTHPN CPVKRKVETT LDGQIAEIVY SGEHNHPKPH SLMKPLSSTK 180
TEVAVTNVCD NNSVEAESLI LDRNKAPGTA VTACGGSSDC VDKFEKLSED ADSNKSSDGR 240
DGFKKQPDSL SKQCPIVSTN LHQLI
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK242855 | 5e-60 | AK242855.1 Oryza sativa Japonica Group cDNA, clone: J090073J20, full insert sequence. |
| GenBank | AP014967 | 5e-60 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
| GenBank | AP014968 | 5e-60 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | AY341860 | 5e-60 | AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds. |
| GenBank | BX000496 | 5e-60 | BX000496.1 Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | BX000503 | 5e-60 | BX000503.2 Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | BX072548 | 5e-60 | BX072548.4 Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | CP012620 | 5e-60 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
