PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00112.1.g00360.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 745aa    MW: 80487 Da    PI: 5.3178
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00112.1.g00360.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.32e-1196136141
                                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS
                        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLte 41 
                                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ 
  Zjn_sc00112.1.g00360.1.sm.mkhc  96 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEP 136
                                     688999*********************************86 PP
2START23.41.2e-08282357169
                                     HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCG CS
                           START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddk 69 
                                     ela +a++elv++a++++p+W       +++++e+ + f+ + +      + ea+r+s+vv+m+   lve+l+d +
  Zjn_sc00112.1.g00360.1.sm.mkhc 282 ELAVAAMDELVQMAQLDAPLWGVGTagAQLDEEEYARMFPGGIGprqygLRPEASRDSAVVIMTRDSLVEILMDAM 357
                                     57899****************887789************88888**999999*********************987 PP
3START138.85.7e-4435746694206
                                     EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
                           START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                                     m++e+q++splvp R+++fvRy++  ++g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+skvtwvehv+
  Zjn_sc00112.1.g00360.1.sm.mkhc 357 MSMEFQVPSPLVPtRESYFVRYCKNNPDGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSKVTWVEHVE 431
                                     899****************************************98....7***************************** PP

                                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                     +++r++h+l+++lv+sgla+ga++wv tl+rqce+
  Zjn_sc00112.1.g00360.1.sm.mkhc 432 VDERSVHNLYKPLVNSGLAFGARRWVGTLDRQCER 466
                                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1375138IPR009057Homeodomain-like
SuperFamilySSF466891.41E-981138IPR009057Homeodomain-like
SMARTSM003895.0E-494158IPR001356Homeobox domain
CDDcd000862.37E-1096138No hitNo description
PfamPF000464.7E-996136IPR001356Homeobox domain
PROSITE profilePS5084827.519273469IPR002913START domain
SuperFamilySSF559612.86E-28274468No hitNo description
CDDcd088751.91E-94277465No hitNo description
SMARTSM002342.0E-35282466IPR002913START domain
PfamPF018521.2E-36357466IPR002913START domain
Gene3DG3DSA:3.30.530.203.3E-4364460IPR023393START-like domain
SuperFamilySSF559611.37E-24488716No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MTPARLIGRN GVAYGSSSAL SLNQVDLLDN QHLQQAFQQH LFDPIPAPTL DSGDNMIHGH  60
ADTLVDEFES KSCSENPDGT SGDGGQEDLD QRPNKKKRYH RHTQHQIQEM EAFFKECPHP  120
DDKQRKELSR ELGLEPLQNQ HERQENAQLR AENDKLRSEN MRYKEALSTA SCPSCGGPAA  180
LGEMSFDEHH LRIENARLRD EIDRISGIAA KHVGKPMVSF PMLPSPLAAA AARSPLDLAG  240
AYGVQPPSLS ADHIFGVGAG AGDLLRSVST GQLDADKPMI VELAVAAMDE LVQMAQLDAP  300
LWGVGTAGAQ LDEEEYARMF PGGIGPRQYG LRPEASRDSA VVIMTRDSLV EILMDAMSME  360
FQVPSPLVPT RESYFVRYCK NNPDGTWAVV DVSLDSLRPS PVLKCRRRPS GCLIQEMPNG  420
YSKVTWVEHV EVDERSVHNL YKPLVNSGLA FGARRWVGTL DRQCERLASA MASNIPNGDL  480
GVITSIEGRK SMLKLAERMV ASFCGGVTAS AAHQWTTLSG SGAEDVRVMT RKSVDDPGRP  540
PGIVLNAATS FWIPVSPKRV FDFLRDETSR SEWDILSNGG TVQEMAHIAN GRDHGNCVSL  600
LRVNSANSNQ SNMLILQESC TDASGSYVVY APVDVVAMNV VLNGGDPDYV ALLPSGFSIL  660
PDGPPGAPAE GDNPGGGSLL TVAFQILVDS VPTAKLSLGS VATVNSLIAC TVERIKAAIC  720
GGSKIHQCGV KNAPQTLLAM WCSYC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972697.10.0homeobox-leucine zipper protein ROC1
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLK3YGB70.0K3YGB7_SETIT; Uncharacterized protein
STRINGSi013285m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]