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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00111.1.g00760.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 389aa MW: 42529.5 Da PI: 7.0271 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 42.3 | 1.2e-13 | 70 | 168 | 22 | 118 |
GRAS 22 alLarlselaspdgd.pmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshltaNq 100 a+L+ ls s +gd ++qR++ f+eAL+++ ++ ++l+ +l+ + + ++ +++ + f ++P+++++ +aN+ Zjn_sc00111.1.g00760.1.am.mk 70 AALQYLSSVMSFAGDvALQRVVVAFAEALERHAMQLLPGLAWSLQLKVLLPPPTAAYINSAQWsFAMLFPLIRLAAAAANN 150 68999999999999549************************99988776666666666665555***************** PP GRAS 101 aIleavegeervHiiDfd 118 +I ea+ e+rvH++D++ Zjn_sc00111.1.g00760.1.am.mk 151 TIKEATPAEHRVHVVDLG 168 ****************97 PP | |||||||
2 | GRAS | 93.3 | 3.7e-29 | 171 | 370 | 149 | 321 |
GRAS 149 spesgskeeleetgerLakfAeelgvpfefnvl..vakrledleleeLrvkp..gEalaVnlvlqlhrll........... 214 +p+++++ l++ + L++ A +l+vp+ fn++ + +r+ ++ +L v + gEal++ + lq h+l Zjn_sc00111.1.g00760.1.am.mk 171 NPNHEDQSFLSQAAGVLTQEAVRLHVPVVFNPVqdHIDRFIPASVAALGVAQgrGEALVITSTLQFHHLIadkvtedlpak 251 5566788889999999****************755555666669999***9999*************************** PP GRAS 215 ..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 s++++ + d++L+++ +l Pk++v++eq a hn+e + +r+ +a++yy +lf le + + Zjn_sc00111.1.g00760.1.am.mk 252 shskkrknmdtttaTTSHEIT-KADALLRVLCDLTPKLMVLTEQYAYHNGEVLSNRVRNAFDYYEVLFRDLEDA-GGDPMM 330 *********988644444444.59***********************************************887.68889* PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerlee 321 r v ++ll++e++n+++cega++rerhe+le W r+++ Zjn_sc00111.1.g00760.1.am.mk 331 RGLVQHMLLKEELMNIISCEGAQHRERHENLEYWLPRMMR 370 **********************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 15.908 | 22 | 389 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-11 | 70 | 168 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-26 | 171 | 370 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MSLNQSRGKG KAEVAKEDDA EQEIWLMKKK VHHQGSGPSC AGEESSSLAT APAQPPANLG 60 GDSAGGGSSA ALQYLSSVMS FAGDVALQRV VVAFAEALER HAMQLLPGLA WSLQLKVLLP 120 PPTAAYINSA QWSFAMLFPL IRLAAAAANN TIKEATPAEH RVHVVDLGGA NPNHEDQSFL 180 SQAAGVLTQE AVRLHVPVVF NPVQDHIDRF IPASVAALGV AQGRGEALVI TSTLQFHHLI 240 ADKVTEDLPA KSHSKKRKNM DTTTATTSHE ITKADALLRV LCDLTPKLMV LTEQYAYHNG 300 EVLSNRVRNA FDYYEVLFRD LEDAGGDPMM RGLVQHMLLK EELMNIISCE GAQHRERHEN 360 LEYWLPRMMR SRKSRAWHTK CQVMAASGH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303827.1 | 3e-80 | scarecrow-like protein 3 | ||||
TrEMBL | A0A368QJM9 | 1e-85 | A0A368QJM9_SETIT; Uncharacterized protein | ||||
TrEMBL | K3ZDF1 | 7e-85 | K3ZDF1_SETIT; Uncharacterized protein | ||||
STRING | Si024587m | 1e-85 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13716 | 13 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 2e-30 | scarecrow-like 3 |